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Detailed information on CNT30370038


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553359Oryza glumipatulaOryza glaberrima10075.4399.18611forward
CNT30108937Oryza glumipatulaOryza longistaminata25.716.2784.08157forward
CNT30101395Oryza glumipatulaOryza rufipogon93.9499.6598.95574forward
CNT30576050Oryza glumipatulaOryza barthii10087.5499.18611forward

Expression of CNT30370038

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MMSASVPPGGAPGHGGARGQGFAPCFWSRLGG*

>peptide 2 (37 aa)
MAVVNRQQATDDGGGVEEEIRKEIMLGSLLEGARLGK*

Sequence

>CNT30370038
GATGAACTCATGAAAGAGTGAGTAACCCGAGAAGCTGTCAGTGAGAGAAAGAAGCCGTCGATGGGGGAGGAGTTGGCGAAGCGGCAGCAGCATCCGCGAT
GATGTCGGCGTCCGTTCCGCCGGGCGGAGCCCCTGGTCACGGCGGAGCCCGCGGCCAAGGATTTGCGCCGTGTTTTTGGTCGCGATTGGGGGGTTGACGA
GTTGTCCCGATACAGCATGGCAGTGGTGAACCGACAACAAGCCACTGATGATGGAGGGGGAGTGGAAGAGGAGATAAGAAAGGAAATAATGCTCGGAAGC
CTACTAGAGGGTGCGCGATTGGGCAAATAAGCCTAGACATAGGGGCGTGTGTTTGGGCGAAATGCTTGCAGCTTGCGGGGCAGCAGGAGGTGATTTTAGA
GTTTGCTTCAAAAAATAAAAGTAAGTGATCATAATCTATTTGCTTGGTCATGTAGATAGAATCTTATAAAACTAGTAGATACCCCGCGCGTTGCTGCGGG
CATAGAAGTACAATTATCAATGTGCAACATTAGTGCAAACAATCTAAATAAATTTGCTTATAATTTGCTGAGAATCTCTTAATGATAGTTCTGATCCCAC
TGATGTCTGAT