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Detailed information on CNT30370025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107111Oryza glumipatulaOryza longistaminata78.3190.1697.34715forward
CNT30576114Oryza glumipatulaOryza barthii88.8373.0699.75811forward
CNT30116461Oryza glumipatulaOryza nivara10079.8899.56913forward

Expression of CNT30370025

Peptides detected in this lncRNA

>peptide 1 (58 aa)
YRSPMKDLGFGGSHPPDFLSRSGADGVVRRGRMQVVVGTARGEVERRRRASSSLFSSP*

>peptide 2 (45 aa)
MGDWEPALLDVSLALILSPASTIYSANQVQEVLKFFDDTHVADLL*

>peptide 3 (31 aa)
MSLSPSSYRPRQRYIVPTRSRKFLSSLMIPM*

Sequence

>CNT30370025
CTATCGCAGCCCAATGAAGGATTTAGGGTTCGGTGGGTCTCATCCTCCTGACTTCCTGAGTCGGAGCGGCGCCGACGGCGTAGTGCGGCGCGGTCGCATG
CAGGTGGTGGTAGGGACAGCGCGCGGCGAGGTGGAGCGTCGGCGTCGTGCATCCTCTTCACTCTTCAGCTCACCATGAATAGCATCCACCGTCTCCCCCC
ATCGACCAGCTGCTGGCAACATACGTTTCTATCAGCAGCTAGCTGTCCTAGCTAGCCTCATCAGTTCAGCGCATCGATGGGAGATTGGGAGCCGGCACTG
CTCGATGTCTCTCTCGCCCTCATCTTATCGCCCGCGTCAACGATATATAGTGCCAACCAGGTCCAGGAAGTTCTTAAGTTCTTTGATGATACCCATGTAG
CTGACCTTCTTTGATGATACTTTGTTCCCATATCTGATTGGTTGATATACATTGCAATGTATAGGCACCAAACAAAGCAGTTGTTGTGTTCCTTTGCATA
GAGATTTTTACATCATCTCTGATATGTCTCATGTTTCTGTTAATTATCTCCTATCCCAGTCCACTTTCATGGGCTTTAAAGCTGCACTGCCAGTAAATTG
AGGTGGTAAGCAGCCATCGAATCATCCGCTCCTAAAATTCTAAGCATTCGTGAGTTCCTTGATGATCCCTGTTTGTTTCCTGTTGATTACAAGTTAATAG
ATGCTACACTAAGACCTTGACTTTGCAACCTTCAGTCTCTAATTGTCTGCATGCATCATTTACTCCAGAGTTCTAATTAACAGGATTTTCAGGTGAAGGC
CATCTGTGGATCCAAAATATATTGTTCTTTGGCTAAGATTTTAGGTCTGGCTGTTTTTCTCCATTTCATATAAGCTTTTTGAAAATATCCCATATTAAAT
ATTTCTATTTGAG