« Back to Oryza glumipatula search


Detailed information on CNT30370023


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692870Oryza glumipatulaOryza sativa57.7925.3698.58141forward
CNT30316626Oryza glumipatulaCorylus avellana31.5615.0784.4277forward
CNT30703861Oryza glumipatulaQuercus lobata31.5630.0884.4277forward
CNT30500052Oryza glumipatulaCoffea canephora22.5420.9987.2755forward
CNT30192114Oryza glumipatulaSecale cereale58.217.4488.03142forward
CNT30133477Oryza glumipatulaLolium perenne56.9768.8187.05139forward
CNT30101518Oryza glumipatulaOryza rufipogon57.7958.2698.58141forward
CNT30603989Oryza glumipatulaOryza punctata59.0266.0697.92144forward

Expression of CNT30370023

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MRAVTVCILFWLPLRQHAQIFQHSSQDSLVEI*

Sequence

>CNT30370023
GGGCTTTCCAAGATGACAAGGGAGGGGTCTCAGAATTTTGCCAAGTAGTGTTGGCCATCGCCTGAGGATACCGGTCGCCTCGAACATCATCTGTGCTGGC
GTATGGGGCATACATCGCTTCCCTGATGATGGACCCAGGCCAATGCGAGCTGTGACGGTGTGCATCCTTTTCTGGCTGCCATTGCGTCAACACGCTCAAA
TATTTCAGCATTCTTCTCAAGATTCTCTGGTTGAAATCTAGGAA