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Detailed information on CNT30370019


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676770Oryza glumipatulaSetaria viridis13.9833.6588.7371forward
CNT30180948Oryza glumipatulaSecale cereale28.947.1784.35147forward
CNT30221132Oryza glumipatulaHordeum vulgare13.192989.5567forward
CNT30586754Oryza glumipatulaMusa acuminata13.7825.9391.4370forward
CNT30254684Oryza glumipatulaAvena sativa14.3732.4493.1573forward
CNT30612661Oryza glumipatulaArabis alpina12.822.4986.1565forward
CNT30653715Oryza glumipatulaRosa chinensis26.5723.1685.93135forward
CNT30214941Oryza glumipatulaHelianthus annuus15.1630.284.4277forward
CNT30680357Oryza glumipatulaTriticum urartu29.9253.5287.5152forward
CNT30604398Oryza glumipatulaOryza punctata29.136.2685.81148forward

Expression of CNT30370019

Peptides detected in this lncRNA

>peptide 1 (46 aa)
PGRGSRGHCALGRWRRRRCRRGRRPRRCRGCRRRRTGRRTTAPCTQ*

>peptide 2 (53 aa)
RDVGVAGIALWVGGGEDGVDEDEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

>peptide 3 (41 aa)
MPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

Sequence

>CNT30370019
ACCGGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGGCCCAGGCGATGCCGAGGGTGCCGACGC
CGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAACTCCGCAATGAGCGC
CCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGCTCCGGCTCCTCGCTC
ACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTACCTCTCTCTTCTCTGATGG
ATGTAGAGAGGAGGGGAGCGTGGGACTGGCCGGTTTTATTGAGAGCGCGGTGCTGTCATTAATGGAAAAAAAACCGGCCCAGGTACAAGAGAAGAGAAGG
AAAGGTGT