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Detailed information on CNT30369978


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692136Oryza glumipatulaOryza sativa94.5458.0198.03710forward
CNT30678563Oryza glumipatulaSetaria viridis15.3154.7689.57115forward
CNT30519927Oryza glumipatulaSetaria italica53.2623.3188.75400forward
CNT30377107Oryza glumipatulaArabidopsis thaliana23.4437.2183.52176forward
CNT30616919Oryza glumipatulaSesamum indicum17.0439.6383.59128forward
CNT3020926Oryza glumipatulaCitrullus lanatus35.1537.8886.74264forward
CNT30380803Oryza glumipatulaManihot esculenta22.2435.6182.63167forward
CNT30122206Oryza glumipatulaPhyscomitrium patens13.0521.3583.6798forward
CNT30185311Oryza glumipatulaSecale cereale36.8819.6987.36277forward
CNT30298786Oryza glumipatulaTriticum aestivum31.0388.9395.28233forward
CNT30223857Oryza glumipatulaHordeum vulgare15.8547.2292.44119forward
CNT30563752Oryza glumipatulaActinidia chinensis19.8430.685.91149forward
CNT30592095Oryza glumipatulaMusa acuminata26.6367.885200forward
CNT30552704Oryza glumipatulaOryza glaberrima18.2447.2489.78137forward
CNT30243876Oryza glumipatulaAvena sativa28.7628.6986.11216forward
CNT30663726Oryza glumipatulaTriticum dicoccoides42.2138.3394.32317forward
CNT30260467Oryza glumipatulaBrassica rapa26.6347.9683200forward
CNT30139766Oryza glumipatulaLolium perenne36.8856.5387277forward
CNT302263Oryza glumipatulaZea mays48.0732.3291.41361forward
CNT30228927Oryza glumipatulaAnanas comosus19.4461.688.36146forward
CNT30715065Oryza glumipatulaMalus domestica golden20.6410.983.23155forward
CNT30624536Oryza glumipatulaDaucus carota22.2411.8981.44167forward
CNT30347744Oryza glumipatulaEragrostis tef69.5133.3384.87522forward
CNT30368346Oryza glumipatulaSorghum bicolor12.2534.0782.6192forward
CNT3037432Oryza glumipatulaCucumis melo28.152.6285.78211forward
CNT30575497Oryza glumipatulaOryza barthii89.8853.8396.74675forward
CNT30116279Oryza glumipatulaOryza nivara24.639.32100185forward

Expression of CNT30369978

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MPMSSKRKVNMWRLSGWWEKKSRMRQFSWTCDLGLGLSECTMSGNFMPSRMKKTGKLLPTRSQLPSRV*

>peptide 2 (71 aa)
PGQNASCSFSEKKLSMLRLSTILPTGCSGTMSSGHVLVTSSGSKSKRSSWSGSMVWMNSFHSGKLPAAMES*

>peptide 3 (80 aa)
GAERQLLVLREEVVDVAVEHHPPHGLQRDDVLGPRLGDVERVEVEAVLVVGVDGLDEQLPLREVAGGDGVVEVGFQWNLT*

>peptide 4 (41 aa)
MAKPRGSRRVSGLPRSWMTVEKRTMTGVWTPGARRKSAQVR*

>peptide 5 (28 aa)
MSWVTSKKPLALAPRACTTRSGIRSLSKL

Sequence

>CNT30369978
CCGGGGCAGAACGCCAGCTGCTCGTTCTCCGAGAAGAAGTTGTCGATGTTGCGGTTGAGCACCATCCTCCCCACGGGCTGCAGCGGGACGATGTCCTCGG
GCCACGTCTTGGTGACGTCGAGCGGGTCGAAGTCGAAGCGGTCCTCGTGGTCGGGGTCGATGGTCTGGATGAACAGCTTCCACTCCGGGAAGTTGCCGGC
GGCGATGGAGTCGTAGAGGTGGGCTTCCAGTGGAACTTGACGTAGTGCGACTTGCCGGCGCGGTTGACGAGCGTGTAGGTGTTGACGCCGGAGCCGTCCA
TGTGGCGGTAGTCGGCGGGGATGCCGATGTCGTCGAAGAGGAAGGTGAACATGTGGAGGCTCTCCGGGTGGTGGGAGAAGAAGTCGAGGATGCGCCAGTT
CTCCTGGACGTGCGACTTGGGGTTGGGCTTGAGCGAGTGCACCATGTCCGGGAACTTCATGCCGTCGCGGATGAAGAAGACGGGGAAGTTGTTGCCGACG
AGGTCCCAGTTGCCCTCCCGGGTGTAGAACTTGATGGCGAAGCCACGCGGGTCGCGGAGGGTCTCCGGGCTGCCGCGCTCGTGGATGACGGTGGAGAAGC
GGACGATGACCGGGGTCTGGACGCCCGGGGCGCGGAGGAAGTCGGCGCAGGTGAGGTGAGTGATGTCGTGGGTGACCTCGAAGAAGCCCTTGGCGCTGGC
GCCGCGGGCGTGCACCACGCGCTCCGGGATACGCTCCCTGTCGAAGTTGGC