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Detailed information on CNT30369977


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6XBF8|CDR1_ARATH, E-value = 8e-14

BLAST vs NONCODE:
NONOSAT001006, E-value = 1e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555133Oryza glumipatulaOryza glaberrima50.7536.1290.05372forward
CNT30103135Oryza glumipatulaOryza rufipogon72.316697.55530forward
CNT30577195Oryza glumipatulaOryza barthii63.98100.6494.67469forward
CNT30117522Oryza glumipatulaOryza nivara51.0237.3689.84374forward

Expression of CNT30369977

Peptides detected in this lncRNA

>peptide 1 (51 aa)
AASSSPRLPGTASPPAPSRTRSPASAPPLRGRRRRRTPASSPDSLVRFASC*

>peptide 2 (61 aa)
LLRRRHDCQAQRPLLHRHGRVLRLQRHRCAAAAAAELQRQVRTRLFGLLPARCTHEVIQDQ*

>peptide 3 (44 aa)
MHRLVADLDEVEDHGVVRVHVPGDERRARCAELGDVGEGAEVER*

>peptide 4 (83 aa)
CCFVVATIARHSVPSCTVTDAFSGFSATAARPPPPPNSSVKSGLACSVCFLLDVHMRSFKISNSYSILASWLLVRILNSHCIA*

Sequence

>CNT30369977
TGCTGCTTCGTCGTCGCCACGATTGCCAGGCACAGCGTCCCCTCCTGCACCGTCACGGACGCGTTCTCCGGCTTCAGCGCCACCGCTGCGCGGCCGCCGC
CGCCGCCGAACTCCAGCGTCAAGTCCGGACTCGCTTGTTCGGTTTGCTTCCTGCTAGATGTACACATGAGGTCATTCAAGATCAGTAACTCATACTCTAT
TCTAGCAAGCTGGCTGTTAGTGAGAATTCTGAATTCTCATTGCATCGCCTAACGAAGATAGAAGATCGGAGTGTTATACATCAATCAATTTCTTAGCTGG
GAGTGTTACTCCTGCATTGCCCTACAATTTATGGGTCATGTAATTTGATCTCTCACAGAATCTATAGCGAGGAGTAACAAAGCTTATTTTTGCATTGCCG
GAGTCCACGATGATGCGGGAGCTCGCCGCCGATGCACCGTCTTGTTGCCGACCTTGACGAAGTCGAGGACCACGGTGTAGTACGTGTCCACGTCCCCGGC
GACGAGCGGCGTGCTCGCTGCGCCGAGCTCGGTGACGTTGGCGAGGGTGCCGAAGTTGAACGCTGACGATGTGTTGACGGAGTGCGGGACGAGGCAGTAG
GAGAATCTCCGGCCGAGCGACGCCTCGCCGCCGAGCTGCGTCACGAGGGAGACCGCGTCGCCGCTGAGCCCGACCAGCCCGTCGGCCGGGAACGAGCCGG
CCGTCGTGGTGGAGCAGCCGAACTTGACGCTGC