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Detailed information on CNT30369972


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 5e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553132Oryza glumipatulaOryza glaberrima53.8569.3199.49594forward
CNT30136184Oryza glumipatulaLolium perenne9.8822.4786.24109forward
CNT30229217Oryza glumipatulaAnanas comosus4.5320.929650forward
CNT30340753Oryza glumipatulaEragrostis tef9.4320.9388.46104forward
CNT30575936Oryza glumipatulaOryza barthii55.2188.1399.34609forward
CNT30116167Oryza glumipatulaOryza nivara39.5362.3799.77436forward

Expression of CNT30369972

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MPLTGSRISAAHFPHGRRRTPLYCAGFLRLLDAAAAAAAFLAFLARKTNGLCSEVASSSSASSTIISSSSESLSKSRNAASKSSARA

>peptide 2 (86 aa)
MPCQEKSGRAFDSELSLVSGSYLMDAMAAATSSSSSSSSTRLMTGVALTAGAAAAVARPRLRVSGVVAEGKLSLALSPRMARAASS*

>peptide 3 (37 aa)
MSSGSVLGRFLARPTCPARRSPGGRSTRSSRWSRVRT*

>peptide 4 (67 aa)
MLAWQNHSSMYMTWYKIESQGRRRRRLEPRRTSWPRRRRGSSRRRSSRAPCPGRRRRRRRWSARRRR*

Sequence

>CNT30369972
CTTGAACATATTAATCCTGTCTTGATTTCTTGAACATCAGACAACATAAACATGGTGATTAACTGAAACTCAGATTTTTGCATCAAAGGCACAGCCAAAA
AGATCTTTTACGAGAACGAGAAGCCTCACATAATTTTTCATTACCGAAAGGAACCAGGACGAACACATGCTTGCTTGGCAAAACCACTCTTCTATGTACA
TGACATGGTACAAGATCGAGTCACAGGGTCGCCGGAGACGACGGCTAGAGCCTAGAAGGACAAGCTGGCCTCGACGTCGACGAGGCAGCAGCCGTCGTCG
AAGCTCCAGAGCCCCATGCCCTGGTCGGCGGCGGCGGCGGCGGCGGTGGTCTGCACGGCGTCGGCGCTGAACAGGCTGTCCAGGGACTCGTAGGCGCCGC
CGTTGAAGTAGTTGTACTGGTCGGCGAACAGCAGCGCGTCGAACAGCGCGTCGGTGTCGTCGCCGGAGCCGGAGTCGGTGGTGGTGGTGATGTCCTCCGG
CTCGGTCCTCGGACGCTTCTTGGCGAGGCCGACATGCCCTGCCAGGAGAAGTCCGGGAGGGCGTTCGACTCGGAGCTCTCGCTGGTCTCGGGTTCGTACT
TGATGGACGCCATGGCGGCGGCGACCTCCTCCTCCTCGTCCTCCTCCTCGACGAGGTTGATGACCGGGGTCGCCTTGACGGCCGGGGCGGCGGCGGCGGT
GGCGCGGCCGCGCTTGCGGGTGTCAGGGGTGGTAGCGGAAGGGAAGTTGAGCTTGGCCCTGTCCCCGCGGATGGCGCGCGCGGCGTCGTCGTAGGCGAGC
GCGGCGGCCTCGGCGTTGGTGAAGGTGCCGAGCCAGACGCGGATGCCCTTGACGGGGTCGCGGATCTCCGCCGCCCACTTCCCCCACGGCCGGCGCCGCA
CGCCCCTGTACTGCGCCGGCTTCCTGCGCCTGCTCGACGCCGCCGCCGCCGCCGCCGCCTTCCTCGCCTTCTTGGCGCGGAAGACGAACGGCTTGTGCTC
GGAGGTCGCCTCCTCCTCCTCCGCCTCCTCCACCATCATCTCCTCGTCATCGGAGTCGTTGTCGAAGTCGCGGAACGCGGCCTCGAAGTCGTCGGCGCGC
GCG