« Back to Oryza glumipatula search


Detailed information on CNT30369953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555153Oryza glumipatulaOryza glaberrima37.3818.0991.13203forward
CNT30101390Oryza glumipatulaOryza rufipogon37.389.7589.16203forward
CNT30576123Oryza glumipatulaOryza barthii24.1352.1990.84131forward
CNT30604672Oryza glumipatulaOryza punctata23.947.6586.92130reverse complement

Expression of CNT30369953

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ELQEALLYLLYIRIRSRVGGSSGGVPGSLALIRLLP*

>peptide 2 (30 aa)
MVSSLRIELVLDVEDTCGFYGGCYTFGRED*

>peptide 3 (34 aa)
MDLFIKLSFVYSGWSWTKILIHILFEIRVANFWA*

Sequence

>CNT30369953
CTGAATTACAAGAGGCTCTATTGTATCTTTTGTACATTAGAATAAGGTCGAGAGTGGGGGGAAGCTCTGGAGGAGTGCCCGGAAGTTTGGCGCTCATCCG
ACTTCTTCCTTAACGAGTGTAGCTTCGTAGGAGGAATTCTGGAGGAGTACCGAAGCTGTCGGTACACTCTGCTCCGGGTTCAGAGAAACATCTTCTATAA
AAGGCAGAGATTGGTTCAGATGGTGAGTTCTTTGAGGATTGAGCTTGTTCTGGACGTTGAGGATACATGTGGTTTCTATGGAGGATGCTACACTTTTGGT
CGTGAAGATTAAGTTTAGTTTATTTGTTTTTCCGCTGCGTTTGTGAGAATTATTTATTATTTTTGTAAGACATGGATCTGTTTATCAAATTGTCGTTTGT
GTACTCTGGGTGGTCCTGGACAAAGATTTTAATACACATTCTATTTGAAATTCGGGTAGCGAATTTCTGGGCATGACATCAACGACAAGAAGCTACAGTT
CTCGACTATATGTTCCGTTGTTTCCCTACTAACCATAGAGTCG