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Detailed information on CNT30369945


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XF66|H2B1_ORYSI, E-value = 2e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522992Oryza glumipatulaSetaria italica63.2266.9785.23440forward
CNT30702570Oryza glumipatulaQuercus lobata36.3550.683253forward
CNT30586986Oryza glumipatulaMusa acuminata36.7872.3285.94256forward
CNT30553165Oryza glumipatulaOryza glaberrima66.0910099.57460forward
CNT30231835Oryza glumipatulaAnanas comosus38.5141.2385.45268forward
CNT3066775Oryza glumipatulaLeersia perrieri18.2533.0798.43127forward
CNT30619778Oryza glumipatulaCajanus cajan36.7838.6782.42256forward
CNT30359864Oryza glumipatulaLactuca sativa17.5329.4784.43122forward
CNT30108786Oryza glumipatulaOryza longistaminata40.098.2498.21279forward
CNT30101075Oryza glumipatulaOryza rufipogon48.4248.0799.41337forward
CNT30575689Oryza glumipatulaOryza barthii52.4498.6599.73365forward
CNT30114697Oryza glumipatulaEutrema salsugineum18.9721.5385.61132forward

Expression of CNT30369945

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSLMKEFMIDMALEEIPMSGCTCFRTLNM*

>peptide 2 (33 aa)
INNTRHVYYFKSKPPIMIKHNLQSRHKFATTAT*

Sequence

>CNT30369945
CAATAAATAACACTCGACACGTCTATTACTTCAAATCCAAGCCGCCCATTATGATCAAGCACAATTTACAAAGCAGGCACAAGTTTGCAACTACTGCCAC
CTAGCACACTGCACACACGAGGGGAAAGGGAAGGAGAGAAGCATGGCATCGAAACCCTAGAGAGACAGGCCTAGTTGCTGGTGAACTTGGTGACCGCCTT
GGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAG
CGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGGAGATTCCGATGTCCGGGTGCACCTGCTTCAGGACCTTGA
ATATGTAGATCTTGTAGGTCTCGACGCTCTTCTTCGCCTTCTTCCTCCCCTTCTTGTCGCCGGCGCCGCCCTCCTTGGACGACGCCTTCGACGCCGGCAG
CCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGCGCCTTCTCCGCCGACTTCTCCTCGCCGGCTGCGGGCTTCTTCTCCGCCGGCTTCTTCTCTGCCTTG
GGCGCCATCGGAGCTGCCTCTCGAGGGATCGGCGCAAATGGAGAGAGAGAGAGAGAGAGAGAGAGGCGGGATTCGTGAGGAGGAGGAAGACTTTTT