« Back to Oryza glumipatula search


Detailed information on CNT30369939


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692122Oryza glumipatulaOryza sativa99.4794.3198.58564forward
CNT30596372Oryza glumipatulaOryza meridionalis40.5618.484.35230forward
CNT30106030Oryza glumipatulaOryza longistaminata98.0694.2493.71556forward
CNT30100598Oryza glumipatulaOryza rufipogon95.4187.6898.71541forward
CNT30116169Oryza glumipatulaOryza nivara10097.7699.29567forward

Expression of CNT30369939

Peptides detected in this lncRNA

>peptide 1 (32 aa)
YPNPRRPPPPTPTRRWPSPLVTPAPSEAGRRT*

Sequence

>CNT30369939
CTACCCTAATCCACGACGGCCGCCGCCTCCCACCCCAACTCGTCGCTGGCCGTCGCCTCTAGTTACACCTGCGCCGAGCGAGGCTGGGCGCCGTACGTAG
GGGCGCACCTCGCCATCGAGGGGATCTGAGGCCGTACGTCTGGATCTTCGATCTGCCCTTGTCGACCCCAACATGATCGATCTCCACCTGTTCTCCTCGA
TCTCTAGTCACCACCCTCCCCTTGGACTTAGATGAAGCTAGTTGGTGACAAAGCATTCCTCATTCCTTGAGCAAGAAGTGAATGGAAGTGATGCGTACTT
AAAATGACATCATAAGAGAATCAATGGTGAGACAATGAGAACGGTGCATCTGAAGACAATACCTGCGAATGATGATGGGATCGAATGACAAAGGAATTGT
CCACTGCACCTCCAATCACATATTTATAGATTGAGTGTTATAATTTTGATAGACACCAAGATGTTAGTTTTGTTTGAAATACTTAGTTATTTAGTTGGAT
GTTCCGAACAAATTATTATTATGTATTTCAATTGAATAAATTTGGTTGGTTGTGTCAGAATATATGG