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Detailed information on CNT30369931


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692282Oryza glumipatulaOryza sativa99.3791.86100632forward
CNT30595942Oryza glumipatulaOryza meridionalis100.1695.3697.17637forward
CNT30100647Oryza glumipatulaOryza rufipogon10047.2999.37636reverse complement
CNT30116064Oryza glumipatulaOryza nivara96.794.04100615forward

Expression of CNT30369931

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PERPLLLVVSLPAPPSIASGLSNGEPGGRTHE*

>peptide 2 (38 aa)
GKASSSSRLPPCSSFHCLRPLQWRTRRPHPRMTSPVIA*

>peptide 3 (37 aa)
MRGCEGRSRRRLRACVRSYRIYKAYRYGRRRRSIVRI*

Sequence

>CNT30369931
CCGGAAAGGCCTCTTCTTCTAGTCGTCTCCCTCCCTGCTCCTCCTTCCATTGCCTCCGGCCTCTCCAATGGCGAACCCGGCGGCCGCACCCACGAATGAC
TAGCCCTGTCATTGCCTAGTCTCGGCCAATGTAGGTGTAAGAGGGTGCGGCCGCCGCCGCCGCCGCCACCAAAGGCAGACAGGATGGAGCCAGGCGTTAC
TTGTAGTTGTACTACTGTCTACTACCAACGATGAGAGGATGCGAAGGGAGATCGAGAAGAAGGCTACGTGCGTGTGTGCGTTCGTACCGTATATACAAGG
CGTATAGGTACGGCCGGAGGCGGCGGAGTATTGTACGGATCTAAAAGGTTCTTTGCTTGCCACCGCTCTCCGGGTCATTGGTGATGTTTTCAGTTAATTT
TCCTTTTCAGTAGTTTATATATTGTTGGGTGGAGGATATCTTTGAGCAAAGTCCTCTGAATTTTGAACCATTTTGCTAGTATTATTTTTGTTCCTTCTTC
GAGTTTTGGTTTTACGGAGAGATTTTTATGCCCCTGACTCTTCTCGTGTAAGTTTGCGAGCAGCGCTTGACTGCTGTTGTGGCTCGAGTAGTTTTAAGTC
TATATATTGGGTTCTCCATGCTAAGCTTGAACTGCA