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Detailed information on CNT30369921


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671345Oryza glumipatulaSetaria viridis98.720.92100227reverse complement
CNT30702366Oryza glumipatulaQuercus lobata98.722.7999.12227reverse complement
CNT30618341Oryza glumipatulaSesamum indicum98.742.0498.24227forward
CNT30504586Oryza glumipatulaNicotiana attenuata98.712.8998.68227forward
CNT30712072Oryza glumipatulaGlycine max96.9635.1795.52223forward
CNT30637481Oryza glumipatulaCapsicum annuum98.750.6796.92227forward
CNT30221833Oryza glumipatulaHordeum vulgare98.716.6396.92227forward
CNT30384972Oryza glumipatulaTriticum turgidum98.736.6799.12227reverse complement
CNT30543267Oryza glumipatulaBrassica napus97.8316.4794.22225forward
CNT30147396Oryza glumipatulaMedicago truncatula98.77.6396.92227forward
CNT30441199Oryza glumipatulaAegilops tauschii98.722.8699.12227forward
CNT30258490Oryza glumipatulaAvena sativa68.721.8899.37158forward
CNT30202530Oryza glumipatulaHelianthus annuus98.730.9797.36227forward
CNT30682011Oryza glumipatulaTriticum urartu80.4318.9798.38185forward
CNT30484247Oryza glumipatulaChara braunii29.574.8992.6568reverse complement
CNT30434185Oryza glumipatulaPapaver somniferum98.733.2489.87227forward
CNT30571801Oryza glumipatulaVitis vinifera98.717.3999.12227reverse complement
CNT3057237Oryza glumipatulaAmborella trichopoda53.918.9994.35124forward
CNT3038324Oryza glumipatulaCucumis melo98.712.0496.92227reverse complement
CNT30557400Oryza glumipatulaPanicum hallii98.716.5597.36227forward

Expression of CNT30369921

Peptides detected in this lncRNA

>peptide 1 (32 aa)
TENCEEPTLVREDWVGSTYGVPVVMPIAAPGS*

>peptide 2 (70 aa)
DGELRGANPSTRGLGWVNLWCTGCYANSSAGQLSWYGRTAAPREILLYTSSRTRFLNRTSIGERCKHREV*

Sequence

>CNT30369921
GACGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAA
GTTGGTATGGAAGAACTGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCA
CCGCGAGGTGTGAAGCGATCTCGTACTAAA