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Detailed information on CNT30369897


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30575558Oryza glumipatulaOryza barthii90.4699.4597.23721forward
CNT30116352Oryza glumipatulaOryza nivara100.7596.0599803forward

Expression of CNT30369897

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTKHSISTCERVYIYMDIDAWCNGMVIKGSEDRLI*

>peptide 2 (82 aa)
MLRLMPRMLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30369897
AGCAAATTAAACTAGTTATATATAGGGTTCATGAGATGAGAGTAGCTAATTATTAACACAAGTGGAAGAAACTTTTATTTGACGGTATACAAATAACAAG
ATACAGAGATCAGGCTGATGGATCAATCATATCATATCAGTGATAGATCGATCGTTCGACACATATATATGTATGACAAAACATAGTATAAGTACGTGCG
AAAGGGTTTATATATATATGGATATTGATGCATGGTGTAATGGTATGGTAATTAAGGGATCGGAGGATCGATTAATTTAGAGAGGGCAGTAGTTGAGAAG
GAGAGAGAGATCGACGGGGATGTTGAGATTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCC
AGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGC
ACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTG
CATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCAAT
TAGCTTAATTAGCAGTACTGCCTATAGCTCAGCTCGATCGATCAGAAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCCGGGAT