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Detailed information on CNT30369888


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553271Oryza glumipatulaOryza glaberrima85.5361.4299.39656forward
CNT30595889Oryza glumipatulaOryza meridionalis72.7595.2296.95558forward
CNT30100659Oryza glumipatulaOryza rufipogon50.9810098.72391reverse complement
CNT30575838Oryza glumipatulaOryza barthii85.5345.0299.39656forward
CNT30116241Oryza glumipatulaOryza nivara70.2794.7398.89539forward

Expression of CNT30369888

Peptides detected in this lncRNA

>peptide 1 (38 aa)
LTPNLHPLRSYLLPIYTRALPPPSPASMTPPLSPFSLA*

>peptide 2 (59 aa)
PDSKSPSAPQLPSPHIYTRTPSPLSSLHDPSSLTFLSCLSQELHFLYPPLHRANPMHTP*

>peptide 3 (45 aa)
MEDTDQELCTVAVEMMSSGKLKPCRQLLFYQDSLHREASMKMVHV*

Sequence

>CNT30369888
CCTGACTCCAAATCTCCATCCGCTCCGCAGCTACCTTCTCCCCATATATACACGCGCACTCCCTCCCCCCTCTCCAGCCTCCATGACCCCTCCTCTCTCA
CCTTTCTCTCTTGCCTGAGCCAAGAGCTACACTTTCTATATCCACCACTTCACCGTGCAAACCCCATGCACACGCCTTGACAGAAGCTGAGCTAGCTTCT
CCTGCGTCGCTGCAAGCTGCTACTTTGGTTCGTGACTGAAAGCCAAATGGAAGATACGGATCAGGAGCTATGCACCGTTGCGGTGGAGATGATGAGTTCA
GGAAAACTCAAGCCATGTAGACAGTTGTTGTTCTATCAAGACTCCCTTCACCGAGAAGCATCCATGAAAATGGTTCATGTTTAGCAATAGCACGGTGTTA
TCCTAACTGAGCTTTTCTTCTAGCCACCATCCACATCCTTCTTCAAAACCTCAACATCACTTTGTGTGGGAATTAAAAAGAATTGGTCTTCTTGACCTTG
CAAGACCTTTTCTTGACCTTGTAAGACCCAACATCGTTGTGTTGCTTTTCTTGTTTCTTATTTTTCAATTTCATCCACCTCTTCTTTCTACCTCCCATCT
TTCTCCTAGTTCTTGCCTTCTCTCTCGGTCTATCCCTCCTGAGCTGTATTGATCACTTTCTATGTTATTTTCTCGATGTTTAAAAGAAAATTGATTTTGT
TTAGCAATATACGAACAGATTGTGCAATTCTAGTATACCTGTAAATTGTAATATTATTGCTTGCGTG