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Detailed information on CNT30369885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673182Oryza glumipatulaSetaria viridis22.1720.6592.7196forward
CNT30116376Oryza glumipatulaOryza nivara78.2962.4387.02339forward
CNT30603788Oryza glumipatulaOryza punctata91.2233.5386.58395forward

Expression of CNT30369885

Peptides detected in this lncRNA

>peptide 1 (36 aa)
VSNSRRKGSVFNNRNSFQFSIAAEQANATSQNKDRN*

>peptide 2 (42 aa)
MQTRKPPLERGSFLLGGSLGHLGTGWVLLLHVLDDANSHRLPX

>peptide 3 (36 aa)
MPQAKIKTGISNVNTRIPQQPKGNNQAQNKFKPNRK*

Sequence

>CNT30369885
GTTTCAAATAGCAGAAGAAAAGGTTCAGTTTTTAATAACAGAAACAGTTTCCAGTTTTCAATAGCAGCAGAACAAGCGAATGCCACAAGCCAAAATAAAG
ACAGGAATTAGCAATGTAAATACTCGCATTCCACAACAGCCGAAGGGCAATAATCAGGCTCAGAACAAGTTTAAACCGAACAGAAAATAGAGAGTTTTAA
ACGACACAGTGCACACAGCGAGCATCTGATAATAACGGTCAATTCAACGAGTGCCATGGCCGTGCACAAAACTTTACGAATTAGTAAAAGCTAGATATCT
TAAATGCAGACACGCAAACCACCACTTGAACGAGGATCATTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCACCGGTTGGGTCCTTCTTCTCCACGTTC
TTGATGACGCCAACAGCCACCGTTTGCCTCANA