Detailed information on CNT30369872


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30116356Oryza glumipatulaOryza nivara77.1762.4298.65666forward
CNT30550796Oryza glumipatulaOryza brachyantha49.3633.5485.68426forward

Expression of CNT30369872

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKTIIIKRIEDSFFFLRICRENYSDSGTGSSSHLKLNTTLYQEQMNNEW*

>peptide 2 (39 aa)
MNGRSNLQWRIMDHRIGLSSRAIYDYMHSIIDAIMQVCN*

>peptide 3 (40 aa)
MFSYAVGHVLPVFFDGNEGNWRSSICLMEFRTKIRIPQNG*

>peptide 4 (29 aa)
MQSCKCATSSFFFFLKEMRLGIACNGPGV*

>peptide 5 (36 aa)
SIRPAVCPHLQKGLETLRFHAIKRNSMHTMMSNVGV*

>peptide 6 (29 aa)
MMVLIIQFLLLILKVLCQDKKSLCKPSKP*

Sequence

>CNT30369872
CTAGTATAAGACCAGCCGTTTGTCCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTATGCATACTATGATGTCCAA
TGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATA
TGCAGTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAAGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCA
CAAAATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTT
ATGATGGTACTAATTATTCAGTTTCTTCTATTGATCCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTAT
CATCAAGAGAATTGAAGATTCTTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACA
ACTTTATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGAC
TATATGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCT
GGTGTATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCTGCAGACCTTGC