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Detailed information on CNT30369870


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691962Oryza glumipatulaOryza sativa53.0417.496.93358forward
CNT30105297Oryza glumipatulaOryza longistaminata20.7413.2693.57140forward
CNT30101096Oryza glumipatulaOryza rufipogon20.446.3490.58138reverse complement
CNT30575842Oryza glumipatulaOryza barthii47.4133.2697.19320forward
CNT30116355Oryza glumipatulaOryza nivara21.0415.390.14142forward

Expression of CNT30369870

Peptides detected in this lncRNA

>peptide 1 (93 aa)
CAFLPLAPRLRRRAPVRSGGDRQPAAETDNSEGLPSTRTNWTSKCSCAAKPETSRRPRSSAASSMTPSRDRTSSYCILPLRCHRPWRLSASWM*

>peptide 2 (31 aa)
LRFPSSCSAPPPTSSGEERRRPAAGSRDRQQ*

Sequence

>CNT30369870
CTGCGCTTTCCTTCCTCTTGCTCCGCGCCTCCGCCGACGAGCTCCGGTGAGGAGCGGCGGCGACCGGCAGCCGGCAGCCGAGACAGACAACAGTGAAGGA
TTGCCATCAACACGAACCAACTGGACATCGAAATGCTCTTGCGCGGCGAAGCCGGAGACTAGCCGTCGGCCAAGGTCTTCCGCCGCTTCGTCCATGACGC
CATCGAGAGACCGGACGAGTTCATATTGCATCCTGCCGCTCCGCTGCCACCGTCCGTGGAGATTGTCCGCGTCATGGATGTGATATCCAATTTTGTACCC
CACTTCCTCTTGAAATTATGCGTTTTTTGCGATTGATGATTTGGTCAGGTTTACTCACTGATTCAGCAGAGCTGTAGAGGAACACGCAATCAGATAGGTA
AGGCTGTGTTTAGTTTAGCGTAAAGTTTAGATTTTGGTTAAAATTAAAGATGATGTGACTGAAAAGTTGTGTGTGTATGACATGTTGATGTGATGGAAAA
GGACTGAAGTTTGGATCCAAACTTTGGATATAAACATAGCCTAAAATGCATGGTGCAATGAATCTGCCATGGTGGTAAGCTGTGAAACCTGGATGCTCTG
GTCTCCGGAACCTAAATTACATACTCCCTCCGTCCCATATTATAAGGGATTTTGAGTTTTTATTTTCAACGTTTG