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Detailed information on CNT3036985


BLAST search results

BLAST vs Swiss-Prot:
sp|P42736|RAP23_ARATH, E-value = 1e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375420Cucumis meloArabidopsis thaliana14.4932.6886.7583forward
CNT3090378Cucumis meloSolanum tuberosum18.6727.0982.24107forward
CNT30704079Cucumis meloPrunus avium18.538.2783.96106forward

Expression of CNT3036985

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SYQLTEFLLIQRHVVHHPKIQINSFKLPISTELTRLLLLTIQPQERS*

>peptide 2 (28 aa)
MWDQRDSLLSLQVRLFSIKSEIMAPPHIF

Sequence

>CNT3036985
GTTCATACCAGCTGACTGAATTTCTCCTCATTCAACGACATGTCGTCCATCATCCAAAGATCCAAATCAACTCGTTCAAACTCCCCATTTCCACCGAGTT
GACTCGGTTGTTGCTCCTCACCATCCAGCCCCAAGAACGATCTTAAACTCGCCAACTCCTCGCCGTAGTACAGCTCCTCGCTGTCACACGAACTATCCGC
ACGTGTACACGGAGGCGAATCGGTTGTGTTGAAGCCACCCGGAGTCAACTCGGGGAGGACGCACTGCTTTTTCACCGGAGTTTGAGGCTGAGCCGTGGGC
GACGGCGGCGCCGGAGCAAAGTTCAGCTTGGCCTTTACTCCTCGGATCCGTTTGGCAGCTTCATCGTAGGCTCTGGCGGCTTCCTCGGCGGTGTTGAAAG
TGCCCAGCCAAACTCGAACTCCCTTTCGTGGGTCCCGAATCTCCGCCGCCCATTTTCCCCACGGCCGAGATCGGAGAAAGGATCGATGTGGGACCAAAGA
GATTCATTGTTAAGCTTACAAGTTCGCCTTTTTTCTATAAAATCAGAGATAATGGCACCACCGCACATTTTTC