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Detailed information on CNT30369844


BLAST search results

BLAST vs Swiss-Prot:
sp|Q32SG5|RIK_MAIZE, E-value = 7e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692367Oryza glumipatulaOryza sativa99.5381.5899.84642forward
CNT30105946Oryza glumipatulaOryza longistaminata99.3833.498.91641forward
CNT30100816Oryza glumipatulaOryza rufipogon99.5356.5199.84642forward
CNT30575866Oryza glumipatulaOryza barthii97.8333.3299.84631forward
CNT30603883Oryza glumipatulaOryza punctata52.7196.3290.88340forward

Expression of CNT30369844

Peptides detected in this lncRNA

>peptide 1 (96 aa)
PETDAPPGLTTLGSFEGNCAEYKFGGETELTSKDLGGAIGLFKSERLSSFLDISFEGNLGGGGGMLLGGGGSMFLGGGGGGGSMFLDADGCAETCG*

>peptide 2 (34 aa)
MLPKPSKPVLTNLDLCCEFWKNETKRLLHQIPLH*

Sequence

>CNT30369844
TACCAGAAACAGATGCCCCACCAGGTTTGACCACTCTAGGCTCCTTTGAAGGTAATTGTGCTGAATACAAATTTGGTGGTGAGACTGAACTCACGTCCAA
GGATCTCGGAGGTGCCATTGGCTTGTTTAAATCTGAACGCCTATCCTCATTTCTTGACATCTCATTTGAAGGAAACTTAGGCGGTGGCGGAGGCATGCTC
TTGGGAGGTGGGGGTAGCATGTTCCTGGGTGGTGGTGGTGGTGGCGGCAGCATGTTCTTGGATGCAGATGGATGTGCAGAAACATGCGGTTGATCTTGAA
GAAGCATCCCATTTGATCCAGGCTGAACTTTAATTGGAGGTTCAATCGATGAATTGGTCATGTTACCTAAACCGTCTAAACCTGTCTTAACAAATTTGGA
CCTCTGTTGTGAGTTCTGGAAAAATGAAACAAAAAGACTTCTCCATCAAATTCCTTTGCATTAGAGTAAATAGTACACAATGAAATACAAATAAAGGATG
AAATCAACAAAATTTGTGCATAAACAGCACAAATCCATAAATTGAAAGCATTATGACTGGTAAGCATCATACATGGATATCAGTTAACCATGCAGAGTTA
TAGAGATTAACTTGCATCTTTCTAAAGTTCATATAACTAAAGAGC