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Detailed information on CNT30369831


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552993Oryza glumipatulaOryza glaberrima83.289.4799.61510forward
CNT30447788Oryza glumipatulaSaccharum spontaneum25.7727.2484.18158forward
CNT30684877Oryza glumipatulaTriticum urartu27.2426.3486.83167forward
CNT30367039Oryza glumipatulaSorghum bicolor27.2428.5580.24167forward
CNT30596850Oryza glumipatulaOryza meridionalis17.1323.54100105forward
CNT30105280Oryza glumipatulaOryza longistaminata84.3482.8592.84517forward
CNT30100768Oryza glumipatulaOryza rufipogon84.1873.595.54516forward
CNT30575695Oryza glumipatulaOryza barthii83.280.3199.02510forward
CNT30116368Oryza glumipatulaOryza nivara83.281.8696.67510forward

Expression of CNT30369831

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SIEYKLINQLCRYTYTRRRMKHALITSWN*

>peptide 2 (92 aa)
MPRMLARRAVQRHTAASRSARPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPPLPPPPEPPP

Sequence

>CNT30369831
GATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACACGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAACTGAATCATATG
CATGCATATATATCTCATTAATTTACGGGATGAAGGGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGGAACAAATTAGACATAGATAGAT
ATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACTGG
AAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGATGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCACACGGCGGCCTCAAGGTCGGCGAGGCCCT
GGATGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGAT
CGGGCATCTTCCTCCTCCCCCGCCGCCTCCGCTTCCTCCTCCTCCGCCGCCTCCGCTTCCTCCACCGCCTGAACCTCCGCCGCCGCTTCCTCCTCCACCT
GAACCGCCGCCTC