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Detailed information on CNT30369817


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007511, E-value = 9e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689988Oryza glumipatulaOryza sativa19.4829.2484.97193forward
CNT30107677Oryza glumipatulaOryza longistaminata19.8862.3485.79197forward
CNT30100916Oryza glumipatulaOryza rufipogon74.7782.4296.9741forward
CNT30576476Oryza glumipatulaOryza barthii18.3736.1885.16182reverse complement
CNT30116255Oryza glumipatulaOryza nivara5.0521.659850reverse complement

Expression of CNT30369817

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MSSPTSPRRAPHSPGILQRGKKRERERDEEGGEGGKREVLTVHPDMWGPRGSHADSATTSDETGVKTTERPKVNGFVS*

>peptide 2 (68 aa)
TARASLTARPRGRTRGEPVTLSLLPHHRRHRRRCRIAGPPDVLSHLAPTSSPLAGHPAEGKKERERER*

>peptide 3 (33 aa)
MLPPPAAVPFGDHVLAGSLAICHHAKPQQDFLC*

Sequence

>CNT30369817
CCACCGCCCGGGCCTCTCTGACGGCCCGACCCCGAGGTCGCACGCGCGGTGAGCCGGTGACGCTCTCCCTTCTCCCGCATCATCGACGACACCGCCGCCG
CTGCCGCATCGCCGGCCCACCGGATGTCCTCTCCCACCTCGCCCCGACGAGCTCCCCACTCGCCGGGCATCCTGCAGAGGGGAAAAAAGAGAGAGAGAGA
GAGAGATGAGGAAGGGGGAGAAGGGGGGAAGAGAGAGGTGCTGACTGTACACCCTGACATGTGGGGCCCACGTGGGTCCCATGCTGACTCAGCCACCACA
TCGGACGAAACCGGGGTCAAAACCACCGAAAGACCTAAAGTGAACGGTTTTGTAAGTTGAAGGATGTCCTATATCTGGTTTTGCGGTTGGAGGATGATTT
TGTAATTCGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCATCATCCCCCACACGGAATTAATCCAGGCCCACAGAAAAAATGGTGTTCGGTTCAG
CCTGGTCGGGATTCTAACCAGGCCCATCCCGGCGTGACGTGTGGGAAGAATTGAAGAAACCCCCGCGACGGGGTGCGAGCGCTCTGGGCGACGCAGTGGT
GGCTGTAGCGGCGGCGCGACTCGGACACGAAGGCGACGGCGCCGCGATGCTCCCCCCTCCGGCGGCAGTCCCCTTTGGTGACCACGTTCTCGCCGGGAGT
CTGGCAATCTGCCATCATGCAAAGCCCCAGCAAGATTTCTTATGCTGAGGTGATGGCATGAAGATGGCTTGAAGACGAGTAAAATTGATGAATTCATCAT
TGTTTATGTGATTTACTGATTGTAGTGAGTGGACGCATGTGACATCACTTGCTGTTTATGCTACGGTGACAACCATGTTTTTGAGCTCTTTTGATTCAGC
AGTGCTTACTTGCAGTGTACAGAACAGGCTTTCTTTTTCTTAATGTTTTTCATGATCTGATGCATACAAATAGCTCAAACGCAACTAGTAT