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Detailed information on CNT30369805


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Oryza glumipatulaOryza sativa99.8645.7197.971432reverse complement
CNT30670953Oryza glumipatulaSetaria viridis22.8735.5498.78328reverse complement
CNT30524653Oryza glumipatulaSetaria italica20.1524.1296.54289forward
CNT30550263Oryza glumipatulaIpomoea triloba67.028.3396.36961forward
CNT30378671Oryza glumipatulaArabidopsis thaliana10.5353.5598.01151reverse complement
CNT30632593Oryza glumipatulaVigna unguiculata67.0256.9396.15961forward
CNT30504976Oryza glumipatulaNicotiana attenuata26.2268.4995.21376reverse complement
CNT30635645Oryza glumipatulaCapsicum annuum28.7366.5692.72412forward
CNT3098505Oryza glumipatulaSolanum tuberosum29.6443.3294.35425reverse complement
CNT30304298Oryza glumipatulaTriticum aestivum67.2236.4397.1964reverse complement
CNT30221870Oryza glumipatulaHordeum vulgare37.9443.9196.14544forward
CNT30400948Oryza glumipatulaTriticum turgidum67.2238.5697.2964reverse complement
CNT30569653Oryza glumipatulaActinidia chinensis22.0447.0995.57316reverse complement
CNT30585815Oryza glumipatulaMusa acuminata67.0939.6493.97962forward
CNT30234810Oryza glumipatulaBrassica oleracea35.767.6491.6512reverse complement
CNT30554921Oryza glumipatulaOryza glaberrima9.6239.0998.55138forward
CNT30147394Oryza glumipatulaMedicago truncatula67.0948.2996.26962forward
CNT30440683Oryza glumipatulaAegilops tauschii54.7481.2697.96785forward
CNT30247816Oryza glumipatulaAvena sativa49.2333.897.03706forward
CNT30662061Oryza glumipatulaTriticum dicoccoides67.2250.2397.2964reverse complement
CNT3081478Oryza glumipatulaBrassica juncea52.0264.4293.43746forward
CNT30143344Oryza glumipatulaLolium perenne67.2243.0997.51964reverse complement
CNT3016633Oryza glumipatulaZea mays68.0651.0796976reverse complement
CNT30229838Oryza glumipatulaAnanas comosus30.498.4295.18436reverse complement
CNT30218527Oryza glumipatulaKalanchoe fedtschenkoi49.7947.9596.22714reverse complement
CNT3067373Oryza glumipatulaLeersia perrieri19.8794.3796.84285forward
CNT30655299Oryza glumipatulaRosa chinensis67.1533.9396.37963forward
CNT30203595Oryza glumipatulaHelianthus annuus67.6452.9595.15970forward
CNT30689128Oryza glumipatulaTriticum urartu67.2251.8696.47964forward
CNT30721611Oryza glumipatulaTriticum spelta15.6248.5996.43224reverse complement
CNT30595506Oryza glumipatulaOryza meridionalis24.0631.3698.84345reverse complement
CNT30360998Oryza glumipatulaLactuca sativa19.6797.2497.52282forward
CNT30154718Oryza glumipatulaPrunus persica30.5463.289.73438forward
CNT30420891Oryza glumipatulaPapaver somniferum41.1421.9791.19590reverse complement
CNT30323793Oryza glumipatulaAsparagus officinalis13.9563.2997200forward
CNT3037914Oryza glumipatulaCucumis melo26.6417.9589.01382forward
CNT30151602Oryza glumipatulaBrachypodium distachyon14.8542.5198.59213reverse complement
CNT30104648Oryza glumipatulaOryza rufipogon40.73100.1797.95584reverse complement
CNT30575706Oryza glumipatulaOryza barthii99.8658.7697.421432forward
CNT30582488Oryza glumipatulaEchinochloa crusgalli67.0979.2497.51962forward
CNT30495774Oryza glumipatulaDigitaria exilis27.4199.2499.24393reverse complement
CNT30116696Oryza glumipatulaOryza nivara99.8636.1298.041432reverse complement
CNT3040451Oryza glumipatulaMarchantia polymorpha12.6230.8392.82181forward

Expression of CNT30369805

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MKLKSLVIADQHAAVNMYPGPVHTACHTLGIGFARSIGPMITHDFCVPLVPQRPLVVLLAHTTVGSSTGVKS*

>peptide 2 (43 aa)
MMLSWSFWMIRYTGTETWPGLSGGQQWGILDIGRKPDPAISRE*

>peptide 3 (47 aa)
MTSSPHGPYGLGHTRATMAMTMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 4 (41 aa)
MTGLEEEAPANSVPAAAVRQGRGQVFFGMTSRKGHVGGESG*

Sequence

>CNT30369805
TATTGCGTGGGAATCTGCCGAACAGTTTGGGCCAAATCCTGAAGAAAGCTCAAAAGCGTTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCGGGTA
AAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTTGGATGATCAGGTACACTGGGACTGAGACATGGCCCGGACTCTCAGGGGGGCAGCAGTGGGGA
ATCTTGGACATTGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACA
GGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGAGGGGGCAAGTGTTCTTCGGAATGACTAGTCGTAAAGGGCATG
TAGGCGGTGAATCGGGTTGAAAGTGAAATCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGT
GTAAGGGTGAAATCCGTAGATCTATGAAGGAACGCCAAAAGCGAAGACAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACA
CGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGG
GAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAG
CCCTTGACATATGAACAACAAAACCTGTCTTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTG
GTCAAGTCCTATAACGAGCGAAACCCTCATTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAATTGTGATACGTAGTGGTAATAGTACGCGCCCCGCTCC
AAAACAAAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCT
GGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAAC
TCGGGAACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTATCCGGGCCCTGTACACACCGCCTGTCACACCCTGGGAAT
TGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCCTTTGGTGGTCTTATTGGCGCATACCACGGTG
GGGTCTTCGACTGGGGTGAAATCGTAACAAGGTA