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Detailed information on CNT30369782


BLAST search results

BLAST vs Swiss-Prot:
sp|A2XF66|H2B1_ORYSI, E-value = 6e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675321Oryza glumipatulaSetaria viridis34.3877.6694.52219forward
CNT30379403Oryza glumipatulaManihot esculenta20.4123.1383.08130forward
CNT30196132Oryza glumipatulaPisum sativum18.2124.4786.21116forward
CNT30163372Oryza glumipatulaPistacia vera18.2120.1483.62116forward
CNT30553215Oryza glumipatulaOryza glaberrima44.5848.399.65284forward
CNT30660671Oryza glumipatulaTriticum dicoccoides31.5536.1594.53201forward
CNT303693Oryza glumipatulaZea mays34.3863.4894.52219forward
CNT30606042Oryza glumipatulaGossypium raimondii21.6645.2585.51138forward
CNT30205622Oryza glumipatulaHelianthus annuus11.9328.1589.4776forward
CNT30681751Oryza glumipatulaTriticum urartu57.9358.8588.89369forward
CNT30363895Oryza glumipatulaSorghum bicolor58.2494.1683.83371forward
CNT30360466Oryza glumipatulaLactuca sativa17.7426.8484.96113forward
CNT30100801Oryza glumipatulaOryza rufipogon92.6291.0596.27590forward
CNT30575811Oryza glumipatulaOryza barthii51.0293.3993.23325forward
CNT3065708Oryza glumipatulaSelaginella moellendorffii20.2537.1884.5129forward

Expression of CNT30369782

Peptides detected in this lncRNA

>peptide 1 (33 aa)
INNTRHVYYFKSKPPIMIKHNLQSRHKFATTAT*

>peptide 2 (29 aa)
MSLMKEFMIDMALEEIPMSGCTCFRTLNM*

Sequence

>CNT30369782
AATAAATAACACTCGACACGTCTATTACTTCAAATCCAAGCCGCCCATTATGATCAAGCACAATTTACAAAGCAGGCACAAGTTTGCAACTACTGCCACC
TAGCACACTGCACACACGAGGGGAAAGGGAAGGAGAGAAGCATGGCATCGAAACCCTAGAGAGACAGGCCTAGTTGCTGGTGAACTTGGTGACCGCCTTG
GTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATCGACATGGCCTTGGAGG
AGATTCCGATGTCCGGGTGCACCTGCTTCAGGACCTTGAATATGTAGATCTTGTAGGTCTCGACGCTCTTCTTCGCCTTCTTCCTCCCCTTCTTGTCGCC
GGCGCCGCCCTCCTTGGACGACGCCTTCGACGCCGGCAGCCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGCGCCTTCTCCGCCGACTTCTCCTCGCCG
GCTGCGGGCTTCTTCTCCGCCGGCTTCTTCTCTGCCTTGGGCGCCATCGGAGCTGCCTCTCGAGGGATCGGCGCAAATGGAGAGAGAGAGAGAGAGAGAG
AGAGGCGGGATTCGTGAGGAGGAGGAAGACTTTTTCC