Detailed information on CNT30369760


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692489Oryza glumipatulaOryza sativa90.886.6799.23780forward
CNT30553012Oryza glumipatulaOryza glaberrima98.3793.1697.87845forward
CNT30595987Oryza glumipatulaOryza meridionalis91.0464.196.8782forward
CNT30105059Oryza glumipatulaOryza longistaminata91.2784.2197.07784forward
CNT30100664Oryza glumipatulaOryza rufipogon96.3910099.4828forward
CNT30575926Oryza glumipatulaOryza barthii91.0493.3298.85782forward
CNT30603889Oryza glumipatulaOryza punctata91.570.4393.13786forward

Expression of CNT30369760

Peptides detected in this lncRNA

>peptide 1 (36 aa)
SIRPAVCPHLQKGLETLRFHAIKRNSMHTMMSNVGV*

>peptide 2 (29 aa)
MMVLIIQFLLLILKVLCQDKKSLCKPSKP*

>peptide 3 (49 aa)
MKTIIIKRIEDSFFFLRICRENYSDSGTGSSSHLKLNTTLYQEQMNNEW*

>peptide 4 (39 aa)
MNGRSNLQWRIMDHRIGLSSRAIYDYMHSIIDAIMQVCN*

>peptide 5 (29 aa)
MQSCKCATSSFFFFLKEMRLGIACNGPGV*

Sequence

>CNT30369760
CTAGTATAAGACCAGCCGTTTGTCCTCATTTGCAGAAAGGGTTAGAAACCCTTAGATTTCATGCCATCAAGCGTAACAGTATGCATACTATGATGTCCAA
TGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGCATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATA
TTTGGTCACGTTCTACCGGTCTTTTTCGATGGAAATGAAGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAA
ATGGCTAGAGGAAAATTTTTAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGA
TGGTACTAATTATTCAGTTTCTTCTATTGATCCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATC
AAGAGAATTGAAGATTCTTTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGGAACAGGTTCAAGTAGCCATTTGAAACTCAACACAACTT
TATATCAAGAACAAATGAACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTATA
TGCATAGTATAATAGATGCAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTG
TATAATGCCATGGCACACTCAACTTGCATTTAAACAATGCTAGTCCCTGCAGACCTTGC