Detailed information on CNT30369729


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3M4|Y4744_ARATH, E-value = 2e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690966Oryza glumipatulaOryza sativa54.4252.7293.36271forward
CNT30596662Oryza glumipatulaOryza meridionalis46.5934.7894.4232forward
CNT30109108Oryza glumipatulaOryza longistaminata23.4919.9393.16117forward
CNT30149732Oryza glumipatulaBrachypodium distachyon94.5899.1685.14471forward
CNT30100248Oryza glumipatulaOryza rufipogon36.7520.6895.63183forward

Expression of CNT30369729

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MPASITAALVSMPSSCGRQPESWLLRRSTSRRESCKLEIDDGIGPVSLLLARAR*

>peptide 2 (90 aa)
RACLRLAEERRALRRPPLVGEAGNAVVLDVEDAVLDQRQARRPDRREVVARQREVGEAAGRAGGELAERVGDLSVEAVAAQVELLDAGEA*

>peptide 3 (47 aa)
GHVFGWLRNDAHSAGRRWLAKPGMQLFLTLRTPSLISDKHAGPTDVK*

Sequence

>CNT30369729
CCGGGCATGTCTTCGGCTGGCTGAGGAACGACGCGCACTCCGCCGGCCGCCGCTGGTTGGCGAAGCCGGGAATGCAGTTGTTCTTGACGTTGAGGACGCC
GTCCTTGATCAGCGACAAGCACGCCGGCCCGACCGACGTGAAGTAGTTGCTCGACAGCGTGAGGTTGGCGAGGCGGCCGGCCGGGCCGGCGGCGAGCTTG
CAGAGCGCGTCGGGGATCTCTCCGTAGAGGCGGTTGCCGCCCAGGTTGAGCTGCTCGACGCTGGTGAGGCATGAGAAGGAGGAGGGGATCGGGCCGGTGA
GCTGGTTCATGCCGGCGTCGATCACTGCGGCCTTGGTGAGCATGCCGAGCTCGTGCGGGAGGCAGCCGGAGAGCTGGTTGTTGAGGAGGAGCACCTCGAG
GAGGGAGTCTTGCAAGTTGGAGATTGATGACGGGATTGGCCCGGTGAGCTTGTTGTTGGCGAGAGCGAGGTAGCTAAACTTGGAGAACCCGAGGTTCG