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Detailed information on CNT30369722


BLAST search results

BLAST vs Swiss-Prot:
sp|M1BJF6|JOKA2_SOLTU, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671107Oryza glumipatulaSetaria viridis2528.2287.4127forward
CNT30519875Oryza glumipatulaSetaria italica2519.2187.4127forward
CNT30395922Oryza glumipatulaTriticum turgidum23.235785.59118forward
CNT30139784Oryza glumipatulaLolium perenne23.8222.3789.26121forward
CNT30364692Oryza glumipatulaSorghum bicolor21.8518.8886.49111forward
CNT30584006Oryza glumipatulaEchinochloa crusgalli24.4124.5585.48124forward
CNT30495845Oryza glumipatulaDigitaria exilis22.8319.0286.21116forward
CNT30556352Oryza glumipatulaPanicum hallii2517.6687.4127forward

Expression of CNT30369722

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MLWKKQWAQVMEQAQDSWARQSGGVSNVQVTPCLCY*

>peptide 2 (48 aa)
SLTPQRSSTACSRLYLFCLSISLFRSTCLKPISSSSFSSFSSVRLSMP*

>peptide 3 (46 aa)
MLVEDLIHRLNIDINQITFVCDIAFWGQIQVYSGSPVVTDKRRILHL

>peptide 4 (52 aa)
FADATEIIDSLLQVVLVLPEYLLVQIDLPKTHFLKFLQQFLFCEIVNAMMIR*

>peptide 5 (37 aa)
MGTGNGAGSGFLGSSIWWCIKCSSNSLFVLLTCWLKT*

Sequence

>CNT30369722
ATTCGCTGACGCCACAGAGATCATCGACAGCCTGCTCCAGGTTGTACTTGTTCTGCCTGAGTATCTCCTTGTTCAGATCGACCTGCCTAAAACCCATTTC
CTCAAGTTCCTTCAGCAGTTTCTCTTCTGTGAGATTGTCAATGCCATGATGATCAGATGATGATGCACCAACAGACGCAGGCTCATCAAAGACAGGCACA
AAAGCAGCAGCAGTTGAACTGGAGGGAACATCAACATCAATGATGGGGTGAAGAGATGTTGTGGAAGAAACAATGGGCACAGGTAATGGAGCAGGCTCAG
GATTCTTGGGCTCGTCAATCTGGTGGTGTATCAAATGTTCAAGTAACTCCTTGTTTGTGCTATTGACATGTTGGTTGAAGACTTGATCCACAGGCTCAAT
ATTGACATCAATCAAATTACTTTTGTTTGTGATATTGCTTTCTGGGGGCAAATTCAAGTTTATAGCGGCAGTCCTGTTGTTACTGACAAAAGAAGGATCC
TCCACCTG