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Detailed information on CNT3036970


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJF6|SAU23_ARATH, E-value = 2e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021641Cucumis meloCitrullus lanatus31.927.2193.51185forward
CNT3049120Cucumis meloCucumis sativus78.1102.2695.36453forward

Expression of CNT3036970

Peptides detected in this lncRNA

>peptide 1 (31 aa)
KERKVYNLYLHNGESSQAFQRGPYPKLSNEG*

>peptide 2 (33 aa)
MINPIEEAQIICPKLGLLPLSEQNQTKSNRVQT*

>peptide 3 (60 aa)
MVEKRDVCSLAVRFMKASSRHGIVKPPVGWQNPNSSSDLLSRSTKEGCFKYDIGTTNLFL*

>peptide 4 (37 aa)
EKNVKYIIFTYIMGKALKLFNAARIRNFQTRDDPLIS*

Sequence

>CNT3036970
GAAAAGAACGTAAAGTATATAATCTTTACCTACATAATGGGGAAAGCTCTCAAGCTTTTCAACGCGGCCCGTATCCGAAACTTTCAAACGAGGGATGATC
CTTTGATCTCGTAGCTTCCGAATCCGATAATGCATTGCTGCAACAATGATCAATCCAATCGAAGAAGCCCAGATAATCTGCCCTAAACTGGGTTTGCTGC
CACTTTCTGAACAAAACCAAACCAAATCAAATCGAGTCCAGACCTGAAAAATGGTGGAAAAAAGAGATGTGTGCAGCTTAGCAGTGAGATTTATGAAAGC
ATCCTCTCGGCATGGAATCGTCAAGCCGCCCGTTGGGTGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAGATCTACAAAAGAAGGATGCTTCAAG
TATGATATAGGGACGACAAATCTCTTCCTTTGAATCTCTCCCACGTAAACTGCAATATGGCCTTTGGGAACATCAGATTGATTTCTGGCTGACATAGCTT
GCATTTTCAAAATCTGCTTGGCGTTGAGAAGAATCGATGGCAGACGGATTCCCATATCGAAAATTTATGTGAAACAAGAG