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Detailed information on CNT30369697


BLAST search results

BLAST vs Swiss-Prot:
sp|P85087|GLNA_VITSX, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691310Oryza glumipatulaOryza sativa42.2387.76100258forward
CNT30225888Oryza glumipatulaHordeum vulgare19.6423.1791.67120forward
CNT30170Oryza glumipatulaZea mays13.9130.4789.4185forward
CNT30364720Oryza glumipatulaSorghum bicolor28.9727.9291.53177forward
CNT30115740Oryza glumipatulaOryza nivara45.3472.89100277forward

Expression of CNT30369697

Peptides detected in this lncRNA

>peptide 1 (67 aa)
QKPRLLEAQQAQQELYIKVITNNNDDKTTCGKEDDDPQDGTSTVGTAIIGGLHKSTQTHSPKRRRKS*

>peptide 2 (82 aa)
MEQPERHGELGRTMTRMSWRQEAASGLPDDGVDVGGLVPAGEPALVALAVGGDVLLVPELELLNGGLDDLVATIVPHRLGAES

>peptide 3 (63 aa)
MADEQCSSSSSMQPNRNGMRIFFGVIFFFFSFLFFLLLPAQMQFTRSSDQWSNRSDTASWGGR*

Sequence

>CNT30369697
CGCAAAAGCCACGGCTATTGGAAGCCCAGCAAGCCCAGCAAGAACTTTATATAAAAGTGATCACTAATAACAATGATGATAAAACCACATGTGGAAAGGA
GGACGATGATCCACAGGATGGGACAAGTACCGTAGGTACGGCCATTATTGGAGGATTACACAAGAGCACCCAAACGCACTCACCCAAAAGACGAAGAAAA
AGCTAATCTAAATGGCAGATGAGCAATGTAGTAGTAGTAGTAGCATGCAACCAAATCGAAATGGAATGAGAATTTTTTTTGGCGTGATTTTCTTTTTTTT
CTCTTTCCTTTTTTTTTTACTTCTCCCAGCACAAATGCAATTCACCAGATCGTCCGATCAATGGAGCAACCGGAGCGACACGGCGAGCTGGGGAGGACGA
TGACGAGGATGTCGTGGCGTCAAGAAGCCGCTTCAGGGCTTCCAGATGATGGTGTTGATGTCGGCGGTCTCGTGCCTGCCGGTGAGCCGGCGCTCGTTGC
CCTCGCCGTAGGCGGAGATGTGCTCCTTGTGCCTGAGCTTGAGCTTCTCAATGGCGGACTTGATGATCTCGTAGCCACCATCGTTCCTCATCGACTTGGT
GCTGAAAGCCG