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Detailed information on CNT30369692


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30302575Oryza glumipatulaTriticum aestivum19.6935.2594.57129forward
CNT30552642Oryza glumipatulaOryza glaberrima41.5342.599.63272forward
CNT30458463Oryza glumipatulaSaccharum spontaneum16.7922.7394.55110forward
CNT30137282Oryza glumipatulaLolium perenne16.6425.4188.07109forward
CNT30684315Oryza glumipatulaTriticum urartu16.7938.691.82110forward
CNT30100365Oryza glumipatulaOryza rufipogon41.5345.7199.26272forward
CNT30575131Oryza glumipatulaOryza barthii50.8449.1997333forward

Expression of CNT30369692

Peptides detected in this lncRNA

>peptide 1 (67 aa)
QKPRLLEAQQAQQELYIKVITNNNDDKTTCGKEDDDPQDGTSTVGTAIIGGLHKSTQTHSPKRRRKS*

>peptide 2 (63 aa)
MADEQCSSSSSMQPNRNGMRIFFGVIFFFFSFLFFLLLPAQMQFTRSSDQWSNRSDTASWGGR*

>peptide 3 (85 aa)
MEQPERHGELGRTMTRMSWRQEAASGLPDDGGLGDHGGDDVRVHVGRRPAILEVALAVLLRLPADAEMCSLCLSLSFSMADLMIS*

Sequence

>CNT30369692
CGCAAAAGCCACGGCTATTGGAAGCCCAGCAAGCCCAGCAAGAACTTTATATAAAAGTGATCACTAATAACAATGATGATAAAACCACATGTGGAAAGGA
GGACGATGATCCACAGGATGGGACAAGTACCGTAGGTACGGCCATTATTGGAGGATTACACAAGAGCACCCAAACGCACTCACCCAAAAGACGAAGAAAA
AGCTAATCTAAATGGCAGATGAGCAATGTAGTAGTAGTAGTAGCATGCAACCAAATCGAAATGGAATGAGAATTTTTTTTGGCGTGATTTTCTTTTTTTT
CTCTTTCCTTTTTTTTTTACTTCTCCCAGCACAAATGCAATTCACCAGATCGTCCGATCAATGGAGCAACCGGAGCGACACGGCGAGCTGGGGAGGACGA
TGACGAGGATGTCGTGGCGTCAAGAAGCCGCTTCAGGGCTTCCAGATGATGGTGGTCTCGGCGATCATGGAGGTGACGACGTAAGGGTCCATGTTGGACG
CCGGCCGGCGATCCTCGAAGTAGCCCTTGCCGTTCTGCTCCGTCTCCCGGCCGACGCGGAGATGTGCTCCTTGTGCCTGAGCTTGAGCTTCTCAATGGCG
GACTTGATGATCTCGTAGCCACCATCGTTCCTCATCGACTTGGTGCTGAAAGCCG