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Detailed information on CNT30369689


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 6e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671156Oryza glumipatulaSetaria viridis20.3430.0382.38261forward
CNT30552889Oryza glumipatulaOryza glaberrima30.9436.992.44397forward
CNT3013906Oryza glumipatulaZea mays38.8295.488.35498forward
CNT30366370Oryza glumipatulaSorghum bicolor23.7723.2578.36305forward
CNT30109053Oryza glumipatulaOryza longistaminata48.7138.4979.84625forward
CNT30101709Oryza glumipatulaOryza rufipogon53.6254.3995.78688forward

Expression of CNT30369689

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MYSASQLDRATTCCLTDYQLTRHSPRKKRIPLVLLLVSMSPAWSLSLYPTKCALPGHLG*

>peptide 2 (41 aa)
MLWQEAKQLECKPKTRFSSAVILLALELVGNIRQINYGKLL*

>peptide 3 (75 aa)
MANCYNSRYYRAIHQSPLLVRTSMVALIEKRMALEMGQFSGFLHSQNTKPYLSEGGWIHIYNHSWLQAYCCTLLV*

Sequence

>CNT30369689
GGCTACTTAATAAGTTAGTATAGAAATATGTATCTTGCATGTTGTGGCAAGAAGCAAAACAATTGGAATGCAAACCAAAAACGAGGTTCAGTTCTGCTGT
GATACTGTTAGCTTTGGAACTTGTAGGAAATATTAGGCAAATAAATTATGGCAAACTGTTATAATAGTCGGTATTATCGTGCAATACACCAGAGCCCTCT
CCTTGTTAGAACTTCAATGGTTGCTCTCATTGAGAAGAGGATGGCACTCGAGATGGGGCAATTTTCTGGTTTTCTTCATTCACAAAACACAAAGCCATAC
CTTTCCGAGGGAGGTTGGATACATATATATAACCATAGTTGGCTGCAAGCCTATTGCTGCACCCTCCTAGTCTAAAAATTCGAAATTTGAATGGGATGCT
GTCCTAGAGGGCATCCAAACTGAATAAAGCATAAAGGAGGCATAAAAGAGATGCTAATTGTTGCTGTCCTACTAACCGCAGCTGTCCTAGCAACTGAAAA
TATGCTAAAGGAGTAGATGCTGTCCTGAAAAAGGTGAAACTACCCAAAAGCAAAAAGAAGAAATCAGGACCAAGGACCACAAAGACTTATCCATCATTCT
CCCCCTAAGTCTTGTGCGTCGTCTTGTGGGGAAGTTAGGCCATCCCGATCCTGGAACAGAGCTCGAGGAACTTGATCCTCCCAAGAGGCTTGGTGAGCAA
GTCCGCAAGCTGGTCCTTGGTGTTGATGTAGCTCGCCTTGATGCTCCCTTCCTCCAAGTAGCTTCGGATGAAGTGGTACCTCACCCGGATGTGCTTGCTC
CGTTCGTGAAAAACGGGGCTCTTTGCCAAGGCCAGAGCGGACTTGCTATCCACCCTGAGCTCCACCGCTCCAGTGTCTCTGCCGAGGAGATCACTAAGCA
ATCGAGCAAGCCAGAGCGCCTGGGTCGAAGCGGCGGAGGCCGCCATGTACTCGGCCTCGCAGCTGGACAGGGCCACCACCTGCTGCTTGACCGACTACCA
GCTAACGAGGCACTCACCGAGGAAGAAGAGAATCCCGCTCGTGCTCTTGCTGGTGTCGATGTCGCCGGCGTGGTCACTATCGCTGTACCCGACGAAGTGT
GCCTTGCCAGGACACCTCGGGTAGTAGAGACCGTGGTCGAGAGTCCCCGCAACGTAGCGGATGATCCTCTTCACAGCCTGCTGGTGCTCCGTCGTCGGTC
GCTGCATGAACCGACTGATGTAGCCGACGGAGAAGGCCAAGTCCGGCCGTGTGTGGGTGAGGTAGCGAAGGCTCCCCACAAGA