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Detailed information on CNT30369666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552605Oryza glumipatulaOryza glaberrima98.478.8496.58555forward
CNT3066950Oryza glumipatulaLeersia perrieri85.6465.8988.2483forward
CNT30105984Oryza glumipatulaOryza longistaminata70.3921.8198.74397forward
CNT30100425Oryza glumipatulaOryza rufipogon10080.898.94564forward
CNT30575140Oryza glumipatulaOryza barthii91.4970.5998.26516forward

Expression of CNT30369666

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SIKTVKLEDLSKSVNGSLTYKGRWQQLAACEGNVTTAQNIIGQSYQYCS*

>peptide 2 (53 aa)
MSSLISHMDGTCWNPAHQHLLLQLHHNCHILQHPLHRHHHHMPHKHHRHLHTRS

>peptide 3 (88 aa)
MATVSCLRRQCHYRTKYNRSIIPILFLTQKALFEGSNSLSIRKLTEYNIAFMCSFYSRLRMGSATKITQLVQLRDNSMKLNKCSGAAD*

>peptide 4 (45 aa)
MVPAGTPPTSTSCSSSTITAISSSTPSIGTTTICPISTIGTSIQGA

Sequence

>CNT30369666
GGTCAATAAAAACAGTCAAATTAGAAGATTTAAGCAAATCCGTTAACGGTTCCCTTACATATAAGGGCAGATGGCAACAGTTAGCTGCTTGCGAAGGCAA
TGTCACTACCGCACAAAATATAATAGGTCAATCATACCAATACTGTTCCTAACACAAAAGGCTTTGTTTGAGGGTTCTAATTCTCTCAGCATACGAAAAC
TAACGGAATACAACATAGCTTTCATGTGTAGCTTCTACAGCAGACTACGGATGGGTTCAGCGACTAAAATTACACAGTTGGTCCAGTTACGAGATAATTC
GATGAAACTAAATAAATGTTCTGGTGCCGCTGATTGAGTAACCCAAGATAAAACGCTGATTTTCCAGGAGGTGCACTTATTGTATCCTAGAAAAAACTCT
CATGAGTTCACTCATTTCCCATATGGATGGTACCTGCTGGAACCCCGCCCACCAGCACCTCCTGCTCCAGCTCCACCATAACTGCCATATCCTCCAGCAC
CCCCTCCATAGGCACCACCACCATATGCCCCATAAGCACCATAGGCACCTCCATACAAGGAGCC