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Detailed information on CNT30369654


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 1e-139

BLAST vs NONCODE:
NONGMAT000778, E-value = 5e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza glumipatulaSetaria viridis31.9343.8490.04281forward
CNT30532843Oryza glumipatulaEucalyptus grandis48.9858.8884.92431forward
CNT30316236Oryza glumipatulaCorylus avellana28.0753.8187.45247forward
CNT30547574Oryza glumipatulaIpomoea triloba27.568.1786.78242forward
CNT30512729Oryza glumipatulaJuglans regia51.0243.6384.86449forward
CNT30373394Oryza glumipatulaArabidopsis thaliana28.5244.6684.46251forward
CNT30276060Oryza glumipatulaChenopodium quinoa27.538.1786.78242forward
CNT30405823Oryza glumipatulaBeta vulgaris26.9352.6785.65237forward
CNT30488117Oryza glumipatulaOlea europaea27.8450.286.12245forward
CNT30711584Oryza glumipatulaGlycine max39.4349.2984.73347forward
CNT3045373Oryza glumipatulaPrunus dulcis2528.0685.45220forward
CNT30191304Oryza glumipatulaSecale cereale52.3935.4391.76461forward
CNT30300473Oryza glumipatulaTriticum aestivum42.538.6489.04374forward
CNT30224354Oryza glumipatulaHordeum vulgare45.1176.4989.67397forward
CNT30395070Oryza glumipatulaTriticum turgidum52.3960.2690.24461forward
CNT30561656Oryza glumipatulaActinidia chinensis51.732.584.4455forward
CNT3085191Oryza glumipatulaVigna radiata22.0527.0680.93194forward
CNT30510505Oryza glumipatulaSolanum lycopersicum33.5227.1690.17295forward
CNT30552635Oryza glumipatulaOryza glaberrima52.3944.4199.57461forward
CNT30143941Oryza glumipatulaMedicago truncatula24.4347.9983.26215forward
CNT30441158Oryza glumipatulaAegilops tauschii48.0755.7388.89423forward
CNT30313757Oryza glumipatulaCamelina sativa29.7729.8784.73262forward
CNT30612508Oryza glumipatulaArabis alpina29.5510.2485.77260forward
CNT30135610Oryza glumipatulaLolium perenne4041.6188.64352forward
CNT3014085Oryza glumipatulaZea mays33.4148.289.46294forward
CNT30605685Oryza glumipatulaGossypium raimondii38.7544.6387.1341forward
CNT30683923Oryza glumipatulaTriticum urartu52.3950.3889.15461forward
CNT30722731Oryza glumipatulaTriticum spelta25.5744.0384.89225forward
CNT30345702Oryza glumipatulaEragrostis tef23.5225.6287.92207forward
CNT30361520Oryza glumipatulaSorghum bicolor25.833.1987.67227forward
CNT30596064Oryza glumipatulaOryza meridionalis42.0572.2798.92370forward
CNT30107537Oryza glumipatulaOryza longistaminata48.1846.1499.76424forward
CNT30332479Oryza glumipatulaDioscorea rotundata11.4835.6986.14101forward
CNT30149525Oryza glumipatulaBrachypodium distachyon12.9537.7586.84114forward
CNT30100253Oryza glumipatulaOryza rufipogon52.3941.8399.78461forward
CNT30575129Oryza glumipatulaOryza barthii48.1852.0999.76424forward
CNT30497701Oryza glumipatulaDigitaria exilis36.3698.4691.25320forward
CNT30116094Oryza glumipatulaOryza nivara52.3952.3999.78461forward
CNT3050899Oryza glumipatulaCucumis sativus6.4822.6289.4757forward

Expression of CNT30369654

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KDDPGSTSVTSRQSKNSFSVAREHRIVDVKHMHSTKGK*

>peptide 2 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

>peptide 3 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

>peptide 4 (58 aa)
MLGPVVSGPKHQIFFARSLSQPNSSDRILERTLGSSRGPIRPSSMASANPSSKGRASM*

Sequence

>CNT30369654
AAAAAGATGATCCAGGTTCCACATCCGTTACATCACGACAGAGTAAAAATAGTTTCTCAGTAGCACGCGAACATAGGATTGTTGATGTGAAACACATGCA
TTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTCTTAGCAGTAGACCAACTAGAACATGTAAGGGTAACGGCACAACACATGCGGCGGCCA
AAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATATCCTGCACCAGGGTTGAAGCCTGCGAGC
CAGCTTCAAGAGGATCAGAGGTCATCATGTCCCAATGGTCGAACACACACTGGGGGAAGGCCTGGCCAGATGTCGCAGCCCTAAGCTGGCTTGAGAACCC
AAAGGACTCGATGACAGGGAGGTAGACGGGCTCAAGAAGCCTGGGCTTTGCTGTGAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGGGAATGACCTGG
CCACCACCTCTGTGAATAGCATCAGCATGGAGAACAACATCGCACACCTCAAAGCAGATACCACGCATGTTCTCCTCAGCCAAAGCACCCTCCTTTGATG
CCCACTGGAAACCAGCCACAACGGAATCCTTGATTTCATTCAGATACTGAACTCCCTTACACATATCAACCACCATGTTGGGGCCAGTTGTCTCAGGTCC
AAAACACCAAATCTTCTTTGCAAGATCCTTGTCCCAGCCGAACTCCTCAGACAGGATCTTGGAGCGCACCTTGGGATCATCACGTGGGCCAATACGACCG
TCATCAATGGCCTCAGCCAATCCCTCCTCCAAGGGGCGAGCTTCCATGTAGAGACGGTTGTGCTTGTTCGGGGACTTGCT