« Back to Cucumis melo search


Detailed information on CNT3036965


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Cucumis meloSetaria viridis52.7594.5894.79384reverse complement
CNT30524663Cucumis meloSetaria italica62.0977.6690.49452forward
CNT30641615Cucumis meloNymphaea colorata61.9581.4196.67451forward
CNT30549212Cucumis meloIpomoea triloba99.3123.9697.93723forward
CNT30513456Cucumis meloJuglans regia99.0422.7299.17721forward
CNT30272552Cucumis meloChenopodium quinoa99.7357.7193.39726forward
CNT30730494Cucumis meloCorchorus capsularis99.0481.9398.61721forward
CNT30630109Cucumis meloVigna unguiculata93.9621.797.81684forward
CNT30196906Cucumis meloPisum sativum45.643.8698.19332forward
CNT3090649Cucumis meloSolanum tuberosum42.1711.2399.67307forward
CNT30294119Cucumis meloTriticum aestivum37.3699.6395.96272reverse complement
CNT30220355Cucumis meloHordeum vulgare39.0194.9896.48284forward
CNT30396824Cucumis meloTriticum turgidum95.1968.8291.77693reverse complement
CNT30569398Cucumis meloActinidia chinensis92.1734.3498.66671forward
CNT30552690Cucumis meloOryza glaberrima98.0846.6491.6714forward
CNT30442196Cucumis meloAegilops tauschii90.2577.4892.69657reverse complement
CNT30657980Cucumis meloTriticum dicoccoides55.2298.5395.27402reverse complement
CNT30460907Cucumis meloSaccharum spontaneum98.0821.4392.58714forward
CNT3017993Cucumis meloZea mays98.0837.9492.58714forward
CNT30207763Cucumis meloHelianthus annuus88.0569.1599.22641forward
CNT30688674Cucumis meloTriticum urartu97.5353.9192.39710forward
CNT30347837Cucumis meloEragrostis tef88.3283.491.29643reverse complement
CNT30363261Cucumis meloSorghum bicolor59.6234.0989.86434forward
CNT30620564Cucumis meloCajanus cajan98.913.9198.06720reverse complement
CNT30354697Cucumis meloLactuca sativa44.2345.6199.69322forward
CNT30481523Cucumis meloChara braunii8.9327.0895.3865reverse complement
CNT30410880Cucumis meloPapaver somniferum99.0479.5898.61721forward
CNT30642274Cucumis meloCannabis sativa92.7282.6293.48675reverse complement
CNT30319706Cucumis meloAsparagus officinalis66.4816.8498.97484forward
CNT30331560Cucumis meloDioscorea rotundata44.2363.7693.17322reverse complement
CNT30148090Cucumis meloBrachypodium distachyon98.0824.5892.44714reverse complement
CNT30104374Cucumis meloOryza rufipogon98.0853.7791.04714reverse complement
CNT30604015Cucumis meloOryza punctata69.37104.5591.88505reverse complement
CNT30174498Cucumis meloVigna angularis54.1278.0296.7394forward
CNT30551087Cucumis meloOryza brachyantha41.35101.0188.04301reverse complement

Expression of CNT3036965

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG*

>peptide 2 (30 aa)
MGSLPLRGWSDRSFENSREGHGEMSRLSSR*

>peptide 3 (71 aa)
MFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHGKRWVAKCGADNC*

Sequence

>CNT3036965
GCAAGACCAACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGA
TAACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTG
GGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTT
TCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTG
AAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGATGGGTTCTCTG
CCCCTGCGGGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGATGAGCCGTTTATCATCACGATAGGTGTCAAGTGGAAGTGCAG
TGATGTATGCAGCTGAGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATTAGGCACTCGCCATCTATTTTCATT
GTTCAACTCTTTGACAACACGAAAAAAA