Detailed information on CNT30369626


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691342Oryza glumipatulaOryza sativa84.186.2299.121026forward
CNT30552482Oryza glumipatulaOryza glaberrima82.0599.599.61001forward
CNT30100577Oryza glumipatulaOryza rufipogon58.0362.3899.15708forward
CNT30575255Oryza glumipatulaOryza barthii77.2110099.68942forward

Expression of CNT30369626

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYE

>peptide 2 (45 aa)
MPFSASSRRPLPSTVPLRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 3 (85 aa)
DRGQLRYLFASPPPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

>peptide 4 (60 aa)
SRPAQISLRLSSSAGSDMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 5 (80 aa)
IAASSDISSPLLLRRERHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

Sequence

>CNT30369626
GATCGCGGCCAGCTCAGATATCTCTTCGCCTCTCCTCCTCCGCCGGGAGCGACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCAC
GGGCACCCGCGCGCGCGCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGC
ACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCCAAATCGCAA
TGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGTTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTT
GTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTG
CCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAA
ACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACC
AGGCAATGGCAAATGAACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGATTACGTCGTCTCTAC
ATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTC
TTAGTAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATG
CCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCC
CATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGA
AAAATTCCAGCTTTTATGAA