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Detailed information on CNT30369613


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000877, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691142Oryza glumipatulaOryza sativa44.1120.9399.16479forward
CNT30555143Oryza glumipatulaOryza glaberrima26.8980.4495.89292forward
CNT30596034Oryza glumipatulaOryza meridionalis41.6279.4493.81452forward
CNT30108101Oryza glumipatulaOryza longistaminata37.8587.0897.57411forward
CNT30100326Oryza glumipatulaOryza rufipogon40.2410094.97437forward
CNT30115577Oryza glumipatulaOryza nivara50.6445.5398.18550forward
CNT30604423Oryza glumipatulaOryza punctata23.0218.4682250forward

Expression of CNT30369613

Peptides detected in this lncRNA

>peptide 1 (59 aa)
STRGADVPTPSFTLNSSQTRRPATLTIPEPKNPREKALCLSAALISITGRGRDDRRQPL*

>peptide 2 (74 aa)
RRVELTCQRRASPSTPLRRVAQPHSPSQSRRIRERRPSASPLLSSPSQAAGETTVDSLSEPRQSPGTKASPMTP*

Sequence

>CNT30369613
CTCGACGCGTGGAGCTGACGTGCCAACGCCGAGCTTCACCCTCAACTCCTCTCAGACGCGTCGCCCAGCCACACTCACCATCCCAGAGCCGAAGAATCCG
AGAGAGAAGGCCCTCTGCCTCTCCGCTGCTCTCATCTCCATCACAGGCCGCGGGAGAGACGACCGTCGACAGCCTCTCTGAGCCACGCCAATCGCCGGGA
ACGAAAGCCTCGCCGATGACGCCCTGAAGCACGCACCGGAGCGCCGCTGTTTCGTCATCATTGTCGCCTGGCCGAATCCATCTATCTCAAGCCAAGCCGC
TGCGCCGTGAAGTTTGCCTCGACTTCCTCTTCAAGACGCCTCAAGAATCATCATCGGAGACACTAGGAGCACGGAGAACACGCCCCTTTTTCCTCGGCGC
CGATCTGAACCTGCCACCGTCGCTACTGCCGAATCCATCCTCTCCGTTCTTGGAGCTGTTCAAGCTATCATCGTCGACCCAGAGGAGATTGCCGCCGCCG
AGCAGTTGCACGAGTCGCCGTCACCCACCAAGCTTTGCCAGTCTTGTCTAGCATCTCGGTTTAGATTTAGTCTTTGAGTGATGCGGGTTCCGATTGCTTC
TTCTAGGATGAGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGATCGGGTAGTCAAGCTTCCGCTGTTCTCTAATAAGTCTATTTGGCCGGTCG
GCCTATTTAATTATTAAGTTGTTGTAAGTCTTAAGTTTTTTTCATCTTAGTTGTGTTTGCTATGTATAATCATGCTTAAGATGAAAGTGTGAATCTAGTG
CACATCCTGGGAACTAGATTTACATGAGTATGAGTTAGGAATATTTGAGAGGTTGTAGATCTTTAGCCATTTTTGTGAAGTCTCCTAAATGTGTAACACA
TCTGGTCGCCGCCTTCAAGTGGTTTGACGGGCACATATCAGGCTGAAGTTGACTGGCAGGCTAAGGGCTCAGCAATGTCTCCAATATTTCTCTCTCGAGG
CGTCCGATGTTTTATTATGCTTGTTTGATGACTTGAATTATTTACTTCATCTCTCAAATATAATGGAAGGTCCGGAGAGCCTACGA