Detailed information on CNT30369580


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30716144Oryza glumipatulaMalus domestica golden7.1821.3886.1565forward
CNT30115919Oryza glumipatulaOryza nivara25.7510099.14233reverse complement

Expression of CNT30369580

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAGNRGGFELLHMVAPSMRQQPHYLQERHK*

>peptide 2 (33 aa)
MQRNYCAVSWTNAISEVLIVPKGCAWIFHHLQT*

>peptide 3 (35 aa)
MITCGFLASCAVAASSLLPPSAKSISKKRKSRQFP*

>peptide 4 (94 aa)
FAALRSLPPLVPFAKKAELHCANFPAFSTPHLEFWKHRFDPSRPFSAPVLKCAGLPLVASSLAVAVAVAVAHTLAAPWLETAADSSYCTWWHQA*

>peptide 5 (49 aa)
SPRSVPSLLSSPSPKKPNSTAPIFLPFLPPTWNSGNIDSILLDPSPPPF*

>peptide 6 (42 aa)
FRRAPFPPSSRPLRQKSRTPLRQFSCLFYPPLGILETSIRSF*

>peptide 7 (75 aa)
MLPKITHNSITYAFEMRYSDRFSMCWVLFSEFVAVIRCSEITALYLGPMQSAKSLSCQKDVHGFSIICKLEDGLP*

Sequence

>CNT30369580
TTTCGCCGCGCTCCGTTCCCTCCCTCCTCTCGTCCCCTTCGCCAAAAAAGCCGAACTCCACTGCGCCAATTTTCCTGCCTTTTCTACCCCCCACTTGGAA
TTCTGGAAACATCGATTCGATCCTTCTAGACCCTTCTCCGCCCCCGTTTTAAAGTGCGCCGGCCTCCCACTCGTCGCTTCATCGCTCGCGGTCGCAGTCG
CAGTCGCAGTCGCCCACACCCTTGCCGCACCATGGCTGGAAACCGCGGCGGATTCGAGTTATTGCACATGGTGGCACCAAGCATGAGGCAACAACCGCAT
TACTTGCAAGAAAGGCACAAGTAAGACCTCTCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGC
CTCCCTCTGCCAAATCTATCAGCAAAAAAAGAAAATCACGTCAGTTTCCTTGAACTATATACATATGATTAATCTAGAAACGCAGTATGTTGCCAAAAAT
CACACACAACTCAATCACATATGCATTTGAGATGAGATACTCAGACAGGTTCAGTATGTGTTGGGTGTTGTTTTCTGAGTTTGTGGCTGTCATAAGATGC
AGCGAAATTACTGCGCTGTATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGTGCCAAAAGGATGTGCATGGATTTTCCATCATTTGCAAACTTGAGG
ATGGCCTGCCCTGATGCCCTCAGATGCTGATGAAGTGTGTGGTTCATGAAAACGTGAGAAGCTAAGTAGTGGAGTAACGGGAGTGAGTACCAGTGTGGCC
ACTATGAAGAAAGTTAATTACTGAGAAATTAAGACTTGAGCATGTTATTTTCAAGCAACTTGTACAGCATTATATTGCACTACCATCAAATGCTTCTCCT
GCCTA