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Detailed information on CNT30369561


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SK39|SBP3_ARATH, E-value = 3e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691502Oryza glumipatulaOryza sativa35.7857.4899.54219forward
CNT30671312Oryza glumipatulaSetaria viridis15.228.3595.793forward
CNT30519660Oryza glumipatulaSetaria italica42.6539.0195.02261forward
CNT30552636Oryza glumipatulaOryza glaberrima61.668.1799.73377forward
CNT30442397Oryza glumipatulaAegilops tauschii25.8215.9496.2158forward
CNT30667282Oryza glumipatulaTriticum dicoccoides18.1424.9495.5111forward
CNT30686589Oryza glumipatulaTriticum urartu25.8216.1295.57158forward
CNT30364531Oryza glumipatulaSorghum bicolor27.9453.4495.32171forward
CNT30595654Oryza glumipatulaOryza meridionalis86.7690.7796.99531forward
CNT30100122Oryza glumipatulaOryza rufipogon85.4691.5999.81523forward

Expression of CNT30369561

Peptides detected in this lncRNA

>peptide 1 (41 aa)
RSRLRTTYGTRNQAAITKKKDQTIQYLNYSPDFLLFRLLGS*

>peptide 2 (39 aa)
MGRSRRTPAAAPPSAPPPSLSPRGCVWISGRLLGCGPCG*

>peptide 3 (60 aa)
IKIKNNLWHKKSSGNHKKERPDNPILKLLPRFLIVQIIGQLIKQPESKAASTDTLTHREK*

Sequence

>CNT30369561
AGATCAAGATTAAGAACAACCTATGGCACAAGAAATCAAGCGGCAATCACAAAAAAGAAAGACCAGACAATCCAATACTTAAATTACTCCCCAGATTTCT
TATTGTTCAGATTATTGGGCAGCTAATCAAGCAACCAGAGAGCAAAGCTGCAAGCACAGACACACTGACACACAGGGAGAAGTAATAATAAGTTACACAT
GGAATTACGGATGGAATTAAGCTGTAGAGCACAAGAGGATACAATAATCTAAGGGTTGATTTGGGGGGATTTTTTTTTTCATTCGGTGAGGCGGGCGACG
ACGGGGTACTTGGCCTGGAACTTGGTCTCCCAGTCGGCGAGGACGCCGAGCTCCTTGTCGGAGAGGCCGGAGAGGTCGCCGGAGACGTCGGCGTCGTCCT
TGGACATCTTGCCGAGCGCGCGGCTGGCCTCGCGGCCGGCGAAGACGGCGTAGACCTTGCCGCGGACGGAGACGTAGATCGGCTTCGATGGGTCGCTCCC
GTCGTACGCCCGCAGCTGCGCCGCCGTCAGCTCCGCCGCCATCTCTCTCTCCTCGCGGCTGTGTGTGGATCAGTGGAAGGTTGTTGGGTTGTGGGCCTTG
TGGCTAGTGGGG