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Detailed information on CNT30369556


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110893Oryza glumipatulaOryza longistaminata71.13101.3393.1840forward
CNT30100560Oryza glumipatulaOryza rufipogon99.0788.9199.661170forward
CNT30575145Oryza glumipatulaOryza barthii74.2668.7399.66877forward

Expression of CNT30369556

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MYASSISAPVDLDLVIRFVFFFFPLRLKKKQRRSRSLCVALSLTSYVLLVRSSSEFALQTCSVCL*

>peptide 2 (41 aa)
MLLRSLLPLTSISLSDSCFSFSLSALRRSKGGRVLFAWLCR*

>peptide 3 (55 aa)
PSVHAPTRSKIYPSLQYSTSSFISFAPSSSLPGVQLQFLLIDNISRLCSGLANCY*

>peptide 4 (39 aa)
MCGQYHKPLIIYTLWPRAGSYIGQFKVFFCPRLLTNKTE*

>peptide 5 (91 aa)
MSTSSTWYDDQFQVISRNGDLPHKIFVEQEYVRCPGYVLVHGKSFPRPIITLWYHKFTTPETDRDKARSTAAHCVHFLFHRQYIFTLKRIM*

>peptide 6 (66 aa)
LPCTHLPDPKYILRFNTALAASSHSPHLPVFQASSSSFFSLTIYPDYALGLLIATSRILGVVVVCR*

>peptide 7 (36 aa)
MNLFCCWSSSYPCMPGDWRIIVTMQQSAYWLLGTRG*

Sequence

>CNT30369556
CCCTTCCGTGCACGCACCTACCCGATCCAAAATATATCCTTCGCTTCAATACAGCACTAGCAGCTTCATCTCATTCGCCCCATCTTCCAGTCTTCCAGGC
GTCCAGCTCCAGTTTCTTCTCATTGACAATATATCCAGATTATGCTCTGGGCTTGCTAATTGCTACTAGTAGAATACTAGGGGTGGTCGTGGTGTGCAGG
TGAGATTATTGCTACCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGTGACGATGCAGCAGTCGGC
TTATTGGCTCTTGGGCACGCGTGGTTAGATGACCATCAGCAAACAAGTTCGTGAGACGCATGCATGGTTTCGTCGATTCTCTGGTTCATTTGAGGTGAGG
CTGCAATAGGAGTTCCTTTTTGTCATGTATGCTTCTTCGATCTCTGCTCCCGTTGACCTCGATCTCGTTATCAGATTCGTGTTTTTCTTTTTCCCTCTCC
GCCTTAAGAAGAAGCAAAGGCGGTCGCGTTCTCTTTGCGTGGCTCTGTCGTTAACTAGCTACGTCTTGCTGGTTAGGAGTAGTTCTGAATTTGCATTGCA
GACTTGCAGTGTGTGTCTCTGAAGACGACGCTGCAAATCGCCATCTCCGTGTGCTTAATTACGACAGGTTTGCAAGGAACAGCGGCTGTTGATGTTGCTG
ATCGTCAGCAATTCCGTGTTTATGCGTGTCTGATTGCAGGAAAAATGAGTACTAGTAGTACCTGGTATGACGATCAGTTCCAGGTCATCAGTAGAAATGG
CGATCTTCCACACAAGATTTTTGTAGAGCAAGAGTACGTTCGATGCCCTGGATATGTTTTAGTACATGGTAAATCTTTCCCTCGGCCAATAATAACGCTG
TGGTATCACAAGTTCACAACCCCGGAGACTGATCGAGACAAAGCAAGGAGCACAGCGGCACATTGTGTTCATTTTTTGTTTCATCGACAATACATTTTCA
CCCTGAAAAGGATTATGTGAACGGAGCTTCCAATGTAAATTGATACATGTGTGGTCAATACCATAAACCTCTCATAATTTACACGCTTTGGCCAAGAGCA
GGCTCGTACATCGGCCAATTCAAGGTGTTCTTTTGTCCAAGATTACTTACGAACAAAACGGAGTAAAAAATATATGTCCCA