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Detailed information on CNT30369534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691617Oryza glumipatulaOryza sativa72.1860.9197.73441forward
CNT30595677Oryza glumipatulaOryza meridionalis72.1871.4790.48441forward
CNT30115994Oryza glumipatulaOryza nivara63.1853.6199.48386forward

Expression of CNT30369534

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SKLSQTEVHIYLKLQTKALLEVGTGTQASTGPYNKCARTDSVNKSTTKKT*

>peptide 2 (46 aa)
MRLMPRMLPLMAVQRHTAASRFTARNRANALDAIATYPRSIDHKRS*

>peptide 3 (35 aa)
MHDRSCVALHAKYVRNVVANKQSSKQIKPRVVKAN*

Sequence

>CNT30369534
AGCAAACTATCACAAACAGAAGTACATATATATCTGAAGTTGCAAACCAAAGCTTTATTAGAAGTTGGTACCGGCACACAAGCTAGCACCGGCCCTTACA
ACAAATGCGCACGTACGGATAGCGTGAATAAGAGTACTACAAAGAAGACATAGGAGAGAGTACAGAGAGAATCCAAACTGGTACCGTGATACGTACAAAC
AGCCAGCATGCACGATCGATCATGCGTTGCGTTGCATGCAAAGTACGTACGTAACGTAGTAGCAAATAAACAGAGCAGCAAGCAAATCAAACCAAGAGTC
GTCAAAGCCAACTAATCACCGTACGTAGGATCAACCCATGCAGGCATTGCATATGCACGCTGCTTAGCACTTGAAGCCGGTGGGGACGGTCTTGCCGCAG
TAGTTGAGGATGAGGTTGATGCCGAGGATGTTGCCCCTGATGGCCGTGCAGAGGCACACCGCCGCCTCGAGGTTCACGGCCAGGAACAGAGCGAACGCCT
TGGACGCCATTGCTACGTACCCGAGATCGATCGATCACAAGCGCAGCTAATCACTAGCTAGCTAATTAAGAGCTCTTGATCAGCTAGAGATGATTAGGCT
GCTTGAGATGG