Detailed information on CNT30369516


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Oryza glumipatulaOryza sativa97.6296.6999.382421forward
CNT30184327Oryza glumipatulaSecale cereale5.2861.586.26131forward
CNT30398990Oryza glumipatulaTriticum turgidum5.1629.9185.94128forward
CNT30459409Oryza glumipatulaSaccharum spontaneum5.6539.5590.71140forward
CNT30575434Oryza glumipatulaOryza barthii100.0480.4299.482481forward
CNT30603626Oryza glumipatulaOryza punctata69.2768.3186.851718forward

Expression of CNT30369516

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMSTVSNVNSRQIRFIPFWCLVSFCIFHERWHF*

>peptide 2 (33 aa)
MAGNRGGFELLHMVAPSMRQQPHYLQERHKIIR*

>peptide 3 (35 aa)
MITCGFLASCAVAASSLLPPSAKSISKKRKSRQFP*

>peptide 4 (36 aa)
MNIIPSAAVKFLCVDGLFLKVYIFYVYNCLSSLLVN*

>peptide 5 (36 aa)
MLSDSHSSNISRCGICVAQVHQSVIVVQSSVLIILD*

>peptide 6 (39 aa)
MWDMRSTSASECYSCSVFSAYYSRLIWTNLSIQLTLVFV*

>peptide 7 (40 aa)
MLVFAYVEITNCSVTFVLCITVDALTEGDRLVLLPAPEHA*

>peptide 8 (42 aa)
FRRAPFPPSSRPLRQKSRTPLRQFSCLFYPPLGILETSIRSF*

>peptide 9 (31 aa)
MYPCCSGFVALQPFCLRYWHLLFRKPFSNSF*

>peptide 10 (33 aa)
MQRNYCAVSWTNAISEVLIVPKGCAWIFHHLQT*

>peptide 11 (30 aa)
MSDGIFEPKIEGKRRISVGACYVLQFFETM*

>peptide 12 (94 aa)
FAALRSLPPLVPFAKKAELHCANFPAFSTPHLEFWKHRFDPSRPFSAPVLKCAGLPLVASSLAVAVAVAVAHTLAAPWLETAADSSYCTWWHQA*

>peptide 13 (66 aa)
MRGLQLLPTSSSEDSVLSDCAHILCAYSAPLRGVCWSSPVIGVGTISIRHNTHQFFIYGIWKEKIGK

>peptide 14 (63 aa)
MLFSSNLYSIILHYHQMLLLPIQYSASSCIVHCFILFKVCLFLLMLRLQIARLLSSYALLLMH*

>peptide 15 (62 aa)
MDVRYSDRFSMCWVLFSEFVAVIRCSEITALYLGPMQSAKSLSCQKDVHGFSIICKLEDGLP*

>peptide 16 (49 aa)
SPRSVPSLLSSPSPKKPNSTAPIFLPFLPPTWNSGNIDSILLDPSPPPF*

Sequence

>CNT30369516
TTTCGCCGCGCTCCGTTCCCTCCCTCCTCTCGTCCCCTTCGCCAAAAAAGCCGAACTCCACTGCGCCAATTTTCCTGCCTTTTCTACCCCCCACTTGGAA
TTCTGGAAACATCGATTCGATCCTTCTAGACCCTTCTCCGCCCCCGTTTTAAAGTGCGCCGGCCTCCCACTCGTCGCTTCATCGCTCGCGGTCGCAGTCG
CAGTCGCAGTCGCCCACACCCTTGCCGCACCATGGCTGGAAACCGCGGCGGATTCGAGTTATTGCACATGGTGGCACCAAGCATGAGGCAACAACCGCAT
TACTTGCAAGAAAGGCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAATC
TATCAGCAAAAAAAGAAAATCACGTCAGTTTCCTTGAACTATATACATATGATTAATCTAGAAACGCAGTATGTTGCCAAAAATCACACACAACTCAATC
ACATATGCATTTGAGATGAGGTAAAATGCTATCTGATTCACATAGTTCCAATATCTCAAGATGTGGGATATGCGTAGCACAAGTGCATCAGAGTGTTATA
GTTGTTCAGTCTTCAGTGCTTATTATTCTAGATTAATTTGGACCAACTTGTCAATTCAGCTGACACTTGTTTTTGTCTAGTGCTCCAGTAGCTTGGTTGT
TTCATCATCATTAGACTTTTAAACCTTTGGTCCTAAACTCCTAGCTGAAAAATTTGCACACTGAACTTCCCTGTGTTCTAAGGAAAAAAAAATCTAGACA
TAACCTTGCTGATCTGTATTATGGACTGGCCATTGGAGTGCATAATGCATAACTGCTGATCACTTTGTTGGCACAAAACTTACGCATAGACATAGGAGGT
ACTTATGTATAATTGTATCTTTAATCAGGACTTTGTTTTCAACCATTTTGTTGATATAACAGTTATACTGTAGTAATGATGAGTACAGTCTCCAATGTAA
ACTCAAGGCAAATCAGATTTATCCCTTTTTGGTGCTTGGTATCTTTTTGTATTTTTCATGAGCGATGGCATTTTTGAACCCAAAATAGAGGGAAAGAGAA
GGATCTCTGTGGGGGCATGCTATGTACTACAGTTCTTTGAGACCATGTAGGTGTGGATGCTTGTTTTGACCTTTTCCTTAACATATAGAAAGAATAAACA
TTAAATAAATGATGACATGGAAATGAAATTCATAAAGGAGTACATAAGCTAGTACTCCTGAAAATATCACTTCATATTCCCCCATGATTCAGTAACATGA
ATATCATACCATCAGCAGCAGTGAAATTTTTATGCGTAGACGGTTTGTTTCTTAAGGTATATATTTTTTATGTTTACAATTGTCTGTCGAGTTTACTGGT
CAATTGAGCAACAACGGTACTTTTAACTGTTAATATCACTTGGTTTGCTATGTATCCTTGTTGTTCTGGCTTTGTTGCTTTACAGCCATTCTGCTTACGC
TATTGGCATCTGTTATTTAGAAAACCATTTTCTAACAGTTTTTAGATTTCCTTTCGAGTCTCCAACTGTTTTTAACCTCCAAGTTGCCACATAATGCATA
AATATACCGAGTAAGTTTGCCCCCCTCTGAAATATGGATGTTAGATACTCAGACAGGTTCAGTATGTGTTGGGTGTTGTTTTCTGAGTTTGTGGCTGTCA
TAAGATGCAGCGAAATTACTGCGCTGTATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGTGCCAAAAGGATGTGCATGGATTTTCCATCATTTGCAA
ACTTGAGGATGGCCTGCCCTGATGCCCTCAGATGCTGATGAAGTGTGTGGTTCATGAAAACGTGAGAAGCTAAGTAGTGGAGTAACGGGAGTGAGTACCA
GTGTGGCCACTATGAAGAAAGTTAATTACTGAGAAATTAAGACTTGAGCATGTTATTTTCAAGCAACTTGTACAGCATTATATTGCACTACCATCAAATG
CTTCTCCTGCCTATACAATACTCTGCAAGCTCTTGTATTGTACACTGTTTTATCTTGTTTAAAGTATGCTTGTTTTTGCTTATGTTGAGATTACAAATTG
CTCGGTTACTTTCGTCCTATGCATTACTGTTGATGCATTAACCGAGGGAGATCGACTAGTGCTTCTTCCTGCTCCAGAACACGCTTGATAATTGAGGAGT
TTGCAGGGGCTTAGTTAGATTATGGTTGGGCCCAGTGTCCTAATCTAGGAACCTGCAGCAATCTGCCCCCTTTGGCCCATGCGTGGCTTGCAGCTCTTGC
CAACCTCAAGTTCAGAAGATTCTGTACTATCGGATTGTGCGCATATATTGTGCGCATATTCAGCTCCTTTGAGGGGAGTTTGCTGGAGTTCTCCAGTTAT
AGGAGTTGGTACTATCAGCATTAGGCACAACACGCATCAGTTTTTTATATATGGCATCTGGAAGGAGAAGATAGGAAAAT