« Back to Oryza glumipatula search


Detailed information on CNT30369487


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Oryza glumipatulaOryza sativa107.69101.2689.13322forward
CNT30552322Oryza glumipatulaOryza glaberrima105.69101.2889.87316forward
CNT30108933Oryza glumipatulaOryza longistaminata106.02102.2686.44317forward
CNT3099765Oryza glumipatulaOryza rufipogon107.69101.2688.51322forward
CNT30574593Oryza glumipatulaOryza barthii105.69101.2889.87316forward
CNT30115823Oryza glumipatulaOryza nivara107.69101.2688.82322forward

Expression of CNT30369487

Peptides detected in this lncRNA

>peptide 1 (38 aa)
PSSVARACNPSGGIKVAVDVLVWILILGPMLCVIFQVA*

Sequence

>CNT30369487
GCCGAGCTCGGTAGCGAGAGCCTGTAACCCAAGCGGGGGCATTAAGGTGGCTGTGGATGTTTTGGTGTGGATACTGATCCTGGGCCCCATGTTGTGTGTA
ATCTTCCAAGTTGCGTAGTGGGCCGGATGGGCTTTGGCGAAGGCCAAATTCTCCGGCCCTAAAGTGGCAGGCAACAGCGTGAGGCTGGCTTCACAGAGCA
GCGATCACTGCCCGCTTCCATCGGGTGGAAGGATAACAGGCTGCTGCACCTTGGGCCCGCTTCTGGCCCAGAGTCCCTCTACAACAGACCACCATCTTT