Detailed information on CNT30369461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552385Oryza glumipatulaOryza glaberrima17.3845.3598.21390forward
CNT3099946Oryza glumipatulaOryza rufipogon43.7229.9898.98981forward
CNT30574810Oryza glumipatulaOryza barthii45.549.2399.021021forward

Expression of CNT30369461

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPLPSNPISFKRQVAAAATRFSTGHVKALHEMRGRLNDGG*

>peptide 2 (39 aa)
MHLILLQSLKFLLKNQLQIMYCSFLRSVGPLPNISKYVI*

>peptide 3 (29 aa)
MPFMYGFSLCWSQAARSCGPCYRLNQLIF*

>peptide 4 (43 aa)
MSGSANLQNNQDIFHSHMDHKYASDPFTIPEISLKESIANHVL*

>peptide 5 (44 aa)
MIQSNLWPLTWFSAICRDLLLGFMCLTCSPQIEGKNACPPTRSG*

>peptide 6 (48 aa)
LRQIASARFPFPFPSPSGGIANHRPRTPMAPSRAARRPLLSALRQTPP*

>peptide 7 (49 aa)
MIGFPLFMHQEFVLDDQIAEFLFPRSIYFLMRELYGLLGVKINSVSILD*

>peptide 8 (85 aa)
PPPNRQRSVSFPFSFALRRDRQPPPSHPHGPIPRRPPPFALRPSPNAALTSIPLNPGHRCPRSGRRSDPIAPPRPCVATQTAARR*

>peptide 9 (89 aa)
PSAKSPALGFLSLFLRPPEGSPTTALAPPWPHPAPPAALCSPPFAKRRLDFDPPKPWPPLPAFRSPFGPHRAASPLRRHPDRGQEIDLR*

Sequence

>CNT30369461
CCCTCCGCCAAATCGCCAGCGCTCGGTTTCCTTTCCCTTTTCCTTCGCCCTCCGGAGGGATCGCCAACCACCGCCCTCGCACCCCCATGGCCCCATCCCG
CGCCGCCCGCCGCCCTTTGCTCTCCGCCCTTCGCCAAACGCCGCCTTGACTTCGATCCCCCTAAACCCTGGCCACCGTTGCCCGCGTTCCGGTCGCCGTT
CGGACCCCATCGCGCCGCCTCGCCCTTGCGTCGCCACCCAGACCGCGGCCAGGAGATAGATCTGCGGTAGACGTGCGGCGTCTTCCTCCTTAATCCGTCA
CCTCGGTTTCTCAGTTCCTCCCACCATGCCCCTCCCTTCCAACCCTATCTCCTTTAAGCGCCAAGTCGCCGCAGCAGCAACGAGGTTCTCAACGGGGCAT
GTTAAGGCTCTGCATGAGATGAGAGGTCGACTCAACGATGGAGGCTGAAAATAAAGCTTGATGTTAAGAACATGCCATTTATGTATGGCTTTAGTTTGTG
TTGGAGCCAAGCTGCCAGATCGTGTGGTCCCTGTTACAGGTTGAATCAACTAATTTTCTGACAGTAGATGTGCTGACGTTCATATACTGCAGTTGAATTT
AACTTCCAAATATTACTGCCAGCATCCGGCCTCCTCAACATCAGATCAGTGTTTCAGGTGTGTGTGTGTGTGTCTCATTTAAATTAGTCATCTTTTCCGG
TTCGAAATTTTCGCTTTGCAATTGGTATATATGTTTACATCACACCCTGAAATTTCTCTAATTCAGAAGAACATGTAACCATAGTAAGTATAAAATTTGC
AAGATATAGATCTTGATGGCCTGGTGCTGCTAGGTGTATGCATTAATTCTGTTGTGCTGGATGTAGTTTGCTTGCCTTTAGGATTATATGATTAGTTAGA
TGTATTTTGTTGGCCTACTGGATGTATGCATTCAGCTCCTGACTCATTCTTGATTTATTTGTGCATGCCGGATCCATGGAAGAATCGGCCACTAAAGTCT
AAACTCTGAAATAAGGTTTTTGGTATATAGTGGCCTATATATTCTGCACGTCATAGATCTTTCATGTCACAGTATTTATGTAAAGGTTGATTAGTACACA
AGTACACATACCTTTTTTGTTATCTTGTAGCATACAAAGTTTACACTTAATCACTACACAAAAGCACTTAAGTATAACTTTGTATTATCTTGCAAGTCAC
CACACTAAACCACTAAACCACTAAACCATCCTATCAAGAGAGAGAGAGATAGATAGATAGAGGTGGCGAGGTGCGGCACCGCTTGGATAGATGGAAGCTG
TTTCTTTTCCTCCGCTAATCACACTTGGATACTCTGGTTTATGGCAATAATGAGCAACAGGGCAGCCACGACATCTGTAGGAGCATAAGAATAAAAAGCC
CAGTTAATCATTGACGTTTGTATTCAACTTATCGATGTCTGGTAGTGCTAATCTCCAAAACAATCAAGATATTTTCCATAGCCATATGGATCATAAATAT
GCATCTGATCCTTTTACAATCCCTGAAATTTCTCTTAAAGAATCAATTGCAAATCATGTATTGTAGTTTTCTGAGGTCCGTTGGTCCATTGCCAAATATT
AGCAAATACGTTATTTAGTCAGAGTTATGGTATCCTTGAAGGTTCGATGATTGGATTTCCTTTATTCATGCATCAGGAATTTGTGTTGGATGATCAAATT
GCAGAATTTTTATTCCCTAGATCTATATACTTTTTAATGAGAGAGTTGTATGGCCTATTAGGAGTGAAGATCAATTCAGTTTCTATCCTAGATTGAGCAG
AGTTAACATGGTCCATTTTTTTTATCATAAATTCATGTTTTCCTGTCTAATAATTTTTTTGCTACCAACTGCATATTCAAATCAACTGTAATTTGATTGC
ACCATGAACTGCATAGCATTAGCATGATCCAATCTAATCTATGGCCTCTAACATGGTTTAGTGCAATCTGTCGTGACCTTCTGCTTGGTTTCATGTGCTT
GACATGTTCTCCTCAGATTGAAGGAAAAAACGCATGTCCTCCCACTAGGAGTGGTTAGTGGTTCATTCTTGAGCATACCAGAAGAAACACGTGCGGTACC
ACGTGATTATCACTGGCTTAACTCTTTATGTAATTTTTTGCTTGAACCTTAATCCCACCCCTTCTATGGGGAAATGTAATGCCTTTAAAATATCAAATGT
CACTACGACGTTATATCTTTTTCAATTTGAGTTATCAAGTGTCA