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Detailed information on CNT30369446


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552300Oryza glumipatulaOryza glaberrima49.544.998.64295forward
CNT30574837Oryza glumipatulaOryza barthii49.1649.6699.32293forward

Expression of CNT30369446

Peptides detected in this lncRNA

>peptide 1 (29 aa)
GQALLYSGHEFIFHTPPSPFVVIAQRRRC*

>peptide 2 (31 aa)
TSFIIFRSRIYFSYTPLSVRSDRTEKKVLIS*

Sequence

>CNT30369446
GGACAAGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCCCTCTCCGTTCGTAGTGATCGCACAGAGAAGAAGGTGCTAATTAGCTAAGC
TCCGTGTACGCACGTACACACGCACGCACGATATACACGTAGAGCTAAGCCACCACATGACCACCACGGCTACGTACGGGCACACATATACGTACGTACG
TACACGGGTACACACAGCAGGTTCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTGCGCTCGCGGAACTCGCCGGTGCAGGTAGTCGTTGCCGTGGTTG
TGGTTGTGGTTGTGGTTGTGGTTGTGGTTGTGGTGGTGGCGGCCGGAGCCGGACCTGTCGATCTCCTGGAACGTCTCCTTGACGACGTGCTGCTGCTGCA
CGCCGCCGCGGCCGAGGAAGCCGCCGGTGGGGGTCACCGACCTCACCTCCTCCGAGCAGTAGTCCACCTCCTGGTAGTGAGCCATTGTTTTTTAGTTGGG
GAGTGAGGTGAGGTGGTGTTGTGATGAGCGAGAGATGGTTAATTAGGGTTTTGGTGGTGTACGGGATGGTAGGGTTAGTGTAGGGGGCGGTTTTAT