« Back to Oryza glumipatula search


Detailed information on CNT30369445


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689987Oryza glumipatulaOryza sativa32.3338.7299.48194forward
CNT30552282Oryza glumipatulaOryza glaberrima32.3334.2899.48194forward
CNT3066731Oryza glumipatulaLeersia perrieri23.1721.5892.81139forward
CNT3099999Oryza glumipatulaOryza rufipogon32.3325.3699.48194forward
CNT30574614Oryza glumipatulaOryza barthii32.3333.1699.48194forward

Expression of CNT30369445

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGMLPKPPRPPGVEPLLPGRLNPGMLLPGMPPNAGTALPKRSNGGNVVGCTTVSLLSAAAAAA

>peptide 2 (50 aa)
MQRRALHRAHYPRSSGDAAGQVSRRRGRRTWACCRSRRGRRGWSRCCRGG*

Sequence

>CNT30369445
GATAGTAATATATATAGCCATCACCATACAATAACACAATAATGATCACATTTAGCATTATTCATGCCTCGAGCTCGAAACAGTGGTAGTACTACTACAT
GATCACGAACTTAATTAAAACACAAAATATAAGAAGGGACCTAATTAAAACAAACAAACACAACCAACCAACAAACAGATAGAATAATCCTCCTCCAAAT
GCATGTAAAGAAAAGAGATAGAAGAGACACTACTCATAATAGAACGCTAGCTAGACACAGTGCAAGCTAACTGCACATATGAAGATATAACGCGCGCGCT
TCATATAGCCATCCATATTGCATGCAACGCCGTGCGCTACATAGAGCACATTACCCGCGCAGCAGCGGCGACGCCGCCGGCCAGGTGAGCCGCCGCCGAG
GCCGCCGAACATGGGCATGCTGCCGAAGCCGCCGAGGCCGCCGGGGGTGGAGCCGCTGCTGCCGGGGAGGCTGAACCCCGGGATGCTGCTGCCGGGCATG
CCGCCGAACGCCGGCACCGCGCTCCCGAAGCGGTCGAACGGCGGGAATGTCGTCGGCTGCACCACCGTGTCCTTGCTCTCCGCCGCCGCCGCCGCCGCCG