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Detailed information on CNT30369442


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378220Oryza glumipatulaArabidopsis thaliana6.4821.3285.2968forward
CNT30134753Oryza glumipatulaLolium perenne13.3368.9785140forward
CNT30342903Oryza glumipatulaEragrostis tef20.2923.4684.04213forward
CNT30106351Oryza glumipatulaOryza longistaminata33.0584.4398.56347forward

Expression of CNT30369442

Peptides detected in this lncRNA

>peptide 1 (85 aa)
YCTENSIRSKSSNSQTGRPVLYIVGHSWALGLVRRLGTGGGGGGAPHAIRPRQGGGVPVHRAPTTRHKLARRGERHNDCTRRPTV*

>peptide 2 (45 aa)
MVTKNILPPSQKNSTWTKGIHEVFWDGGSILLVSFSKSALDFYNH*

>peptide 3 (77 aa)
MHRDQLIGSAFIAFGIILFVGFFYAAVLTKMLPPYENRFLSAIQNDRYYCVLIPLTLPVIIVAVYLHWLSMKMFKHA*

Sequence

>CNT30369442
AGTACTGCACAGAGAACTCAATTCGCAGCAAGTCATCGAACTCACAAACGGGCCGTCCCGTCCTGTATATAGTTGGGCATAGTTGGGCACTTGGGCTGGT
GCGCCGCCTAGGCACCGGCGGCGGAGGCGGCGGCGCGCCACACGCGATAAGACCGAGGCAAGGCGGCGGCGTGCCGGTGCACCGCGCGCCCACCACACGC
CACAAGCTCGCAAGGCGGGGAGAACGCCACAACGATTGCACGCGCCGCCCAACAGTTTGACGGATACCAGGAGCGGGAGATTGCACACCAAAGGTCAAAC
AGGTTGATCTAAAGATGCATAGGGACCAGCTGATTGGGTCGGCATTCATCGCATTTGGCATCATATTATTTGTGGGTTTCTTCTATGCTGCGGTTTTGAC
CAAGATGCTTCCACCATATGAAAACCGGTTTCTGTCAGCAATCCAAAACGATAGGTATTACTGCGTGCTCATACCGTTGACACTCCCAGTGATAATCGTG
GCTGTCTATTTGCATTGGCTAAGCATGAAGATGTTCAAGCATGCATGAAGCCTCATTCTAAAAGTCTGAAGTTCTTTCTCAAATGACAACCTCATTATCA
TGGTGACTAAAAACATACTCCCTCCGTCCCAAAAAAACTCAACCTGGACAAAGGGGATCCATGAGGTTTTTTGGGACGGAGGGAGTATATTACTAGTATC
GTTCTCAAAGTCAGCGTTAGACTTTTACAACCATTAATATATATATTTTTCTGCCAGGAATTCAAACTATACATAATTGTACTATCGTAGAACTATTTGT
CCCCAGCTCCGTCTGTTGCACTAGAAAAAAAAACAGACTAATTTAGGATCAAGGCACAAACAAGTGTCAAATTTTTTTTGTCTATCAAATTTTGCCACCA
GAGTATAATTATTGTTTATAGTACAAAGACTTCAAATCTTGTGCACTGCCTTTTATGTCAATTTTTTACCATGGGTCTTGCATTGAATTTTTCTTTTTTT
TCAAAAAAAACATATTGTTGTGCTAAAAAAAAAGAGAAAAGAAACAAAAG