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Detailed information on CNT30369415


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94CS9|TIP12_ORYSJ, E-value = 4e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690186Oryza glumipatulaOryza sativa43.278.1299.75400forward
CNT30389818Oryza glumipatulaTriticum turgidum15.2322.687.23141forward
CNT30552153Oryza glumipatulaOryza glaberrima62.6392.899.83580forward
CNT30242094Oryza glumipatulaAvena sativa15.4438.8684.62143forward
CNT30660459Oryza glumipatulaTriticum dicoccoides18.6826.7493.06173forward

Expression of CNT30369415

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MVQTQHVCIYLSTNSNKDVKNDSEESFGLGCMGCVDIILQMRQPMDGRRYSCNAWLAWLTAQHRFWN*

>peptide 2 (70 aa)
MEAPSKAPPARMLAPTMKPMAMGAPTAAPPVAILSSRHATTDPSSCATQYTTAFTRLMFPPTNAPNVTAGF

Sequence

>CNT30369415
TTCGGCCTTTGCTTCAAATAAGTTACAACCATTATTGAGAACATGATGGTTCGTTTTCTACGTACATCCCTTAATAATATATAAATAATAGATAGATGGG
ATTTATTTAGGTCCTCATTTGGAGGAAGCAAATGGATCGGAGCGCATAAACTCGTTTCAATCATGAAGTGATGGTGCAAACGCAGCATGTATGTATATAT
CTTTCCACCAACTCAAACAAGGACGTGAAGAACGACAGTGAAGAGAGCTTTGGATTAGGATGCATGGGATGTGTTGACATTATATTGCAGATGAGACAAC
CGATGGATGGACGACGTTACAGCTGCAATGCATGGTTGGCTTGGTTGACAGCACAGCACAGATTTTGGAATTAAAGGAGATTTACGTAATTTGTTTGTAC
AGAAGAAGAGAGTAGTAATTGATTGGGGGTGGAAGACGACACAGGTAGCAGCTGCATGGAGTAATTAATATTCTAGCTATATATGGATCGAGACGGGGGA
CGAATTCGATTATTGAGACTGGGGGCAGACGATATGATATGATATGATCAGTAGTCGGCGGTGGGCAGCTGGTCGTGCGGGCGCTGGCCGATGAAGATGA
TGTCGTAGATGAGCGCGGCGATGGCGGCGCCGACGAAGGGGCCGAGCCAGTAGACCCAGTGGTTGTCCCAGACTCCGGTGACGACGGCGGGGCCGAAGGA
GACGGCGGGGTTCATGGAGGCGCCGTCGAAGGCGCCGCCGGCGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCACCCACGGCGGCGCCG
CCCGTCGCGATCTTGAGCAGCAGGCACGCCACCACCGACCCCAGCAGCTGCGCCACCCAGTACACCACCGCCTTCACCAGGCTGATGTTCCCCCCCACGA
ACGCGCCGAATGTCACCGCCGGGTTC