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Detailed information on CNT30369411


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004272, E-value = 2e-142

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690398Oryza glumipatulaOryza sativa58.9963.2298.34361forward
CNT30553753Oryza glumipatulaOryza glaberrima57.1958.9295.14350forward
CNT30106620Oryza glumipatulaOryza longistaminata56.0555.0691.55343forward
CNT3099666Oryza glumipatulaOryza rufipogon48.6959.7297.99298forward

Expression of CNT30369411

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLEELSRIIEGVKVPNDIDWHGMGVAPLNYTLLLHTIEI*

>peptide 2 (97 aa)
FNQLKKKKKREKGKRSITLQPLQTLAAITPIAAAPSPQVQPSPSSATPARLLESRSFKKQGKQEEKRRKKEREAKVGDFLGVEGSNVGGVESDYRRS*

Sequence

>CNT30369411
ATTTAACCAACTGAAAAAAAAGAAAAAAAGAGAAAAGGGGAAGAGATCGATAACCCTGCAGCCGCTACAAACCCTAGCCGCCATCACCCCAATCGCTGCT
GCGCCGTCGCCGCAGGTTCAGCCATCGCCGTCCAGCGCCACTCCTGCTCGACTCCTTGAGAGCAGGAGTTTCAAGAAGCAGGGAAAGCAGGAGGAGAAAA
GAAGGAAAAAGGAAAGAGAGGCAAAAGTTGGGGATTTTCTGGGTGTGGAGGGTTCCAATGTTGGAGGAGTTGAGTCGGATTATCGAAGGAGTTAAGGTAC
CTAATGATATTGATTGGCATGGGATGGGAGTAGCACCCTTGAACTACACATTATTATTGCACACTATTGAAATTTAGTTTTAGACTATGTTTCTACTTAG
CATAAGTTTTGCGTAGAACTTGTGAAGGTCATTTAAAGTTCTGGTCCTTATTTTCACGTGGAATTTGTGGAGATAGGATGGGTTGGATTGTGTGGTTTAT
ATCGTTATTGAGTTATCTTGTAACTGCCTGTCGTGGATGTCCGTATTTTTAGGTGACTCTGCCGAAATTTCTAATAATTTTGGGAGTTAGTGGTTTTTTT
GAGTGTATTTTG