Detailed information on CNT30369405


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006186, E-value = 4e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696008Oryza glumipatulaOryza sativa40.985.891.6250forward
CNT30596973Oryza glumipatulaOryza meridionalis40.6610.4384.68248reverse complement
CNT30105184Oryza glumipatulaOryza longistaminata41.317.6294.05252reverse complement
CNT3099578Oryza glumipatulaOryza rufipogon101.3145.2795.31618forward
CNT30574672Oryza glumipatulaOryza barthii83.7739.198.63511forward

Expression of CNT30369405

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNVGVDDGIMGSNHEITEVLFDGVSVLYVCKIILL*

>peptide 2 (36 aa)
MELRMIEDSNSPWMGMGSGGLAELSAQIVARLLGEHP

Sequence

>CNT30369405
TTGTGAGATAATTAATTCATATACTGTACCTGTTGCTATATAAGAGCAAGTTCAATAGTGTAGCCAACTACTAGCTCCAATTCATTTATAGCCAATCTAA
TAGCTCATTCATACAATAGTTACATACTACACTATTAATATCTAGTCCCACCTGTCATAGACACACTGCGTCTTGGAGTCCGTGCTACAGCTGGCTACAA
ATCTGTAGCCCGTTGCTCTTCTCTCTCTTGATTTATCTTCGTAAAATATGTTTGCAGCTGGCTTATAGCCTGTTATTGTACCTGCTCTAACGCAGCAAAG
TGTGATGAATGTTGGTGTTGATGATGGGATCATGGGAAGTAACCATGAGATAACAGAGGTATTGTTCGATGGAGTAAGTGTATTATATGTATGTAAAATT
ATATTATTGTAAATCATTTTGAGGAGCTAGACTAGCGTGCCTTATTAACAAGGAGATATGTACCATTACATGATGATTAACATATAAATCTGTAGCTACA
TGGAATTAAGGATGATAGAAGACTCCAATTCTCCATGGATGGGAATGGGATCAGGTGGCCTTGCAGAACTCTCCGCCCAGATCGTCGCACGCCTCCTCGG
GGAACACCCT