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Detailed information on CNT30369403


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS3|TBB6_ORYSJ, E-value = 2e-81

BLAST vs NONCODE:
NONMEST001519, E-value = 3e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675224Oryza glumipatulaSetaria viridis57.5345.4992.33378forward
CNT30196370Oryza glumipatulaPisum sativum35.9224.7686.02236forward
CNT30252641Oryza glumipatulaAvena sativa57.3846.3785.15377forward
CNT30681848Oryza glumipatulaTriticum urartu57.5342.7191.27378forward
CNT30595589Oryza glumipatulaOryza meridionalis59.0685.0998.71388forward
CNT30706519Oryza glumipatulaPrunus avium56.4744.7584.37371forward
CNT3024644Oryza glumipatulaPopulus trichocarpa57.5318.4886.24378forward
CNT3099473Oryza glumipatulaOryza rufipogon58.1499.7499.74382forward
CNT30575061Oryza glumipatulaOryza barthii10072.28100657forward

Expression of CNT30369403

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MFLASHICCVSSGTVRARYCWEPRDVSGANPTMKKWRRGKGIRFTASLRRSEFS*

>peptide 2 (64 aa)
MSSASCCSSSSYSPSSSAVASWYCWYSETRSMPWRGLSVECHRHWTSHCWGSTRRSRMSSCSGH*

>peptide 3 (32 aa)
MARISSAHHVLGIPHLLCELRNSKGTVLLGAT*

>peptide 4 (38 aa)
NINNRRPASSNTVPKKVPIAQTKIQSEDIGSGRWRTRR*

Sequence

>CNT30369403
AATATCAACAATCGCAGACCAGCATCAAGTAATACAGTACCCAAAAAGGTTCCCATAGCACAGACGAAAATACAAAGCGAAGACATAGGAAGCGGGCGGT
GGCGTACGAGGCGGTAATACGGTGATAATGTAAGACGGAAACACCAAGCACACAAAACCCTGCCCTAGAACCACCAAGCAAAAGCCACCTTACATGTCGT
CAGCCTCCTGCTGCTCCTCGTCCTCGTACTCGCCCTCCTCATCGGCGGTGGCATCCTGGTACTGCTGGTACTCAGAGACAAGGTCGATGCCATGGAGAGG
CCTCTCGGTGGAATGTCACAGACACTGGACTTCACATTGTTGGGGATCCACTCGACGAAGTAGGATGAGTTCTTGTTCTGGACATTGATCATCTGCTCAT
CAACCTCCTTGGTGCTCATCTTTCCACGGAACATGGCAGAGGCGGTGAGGTAACGGCCATGGCGAGGATCAGCAGCGCACATCATGTTCTTGGCATCCCA
CATCTGCTGTGTGAGCTCAGGAACAGTAAGGGCACGGTACTGCTGGGAGCCACGTGATGTCAGCGGGGCGAATCCGACCATGAAGAAGTGGAGACGGGGA
AAGGGGATAAGGTTCACTGCCAGCTTACGGAGGTCAGAGTTCAGCTGACCAGGGAAC