Detailed information on CNT30369385


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597234Oryza glumipatulaOryza meridionalis15.358093.06288reverse complement
CNT3099740Oryza glumipatulaOryza rufipogon55.9248.5699.331049forward
CNT30575023Oryza glumipatulaOryza barthii49.9510099.15937forward
CNT30115671Oryza glumipatulaOryza nivara48.9397.6699.35918forward

Expression of CNT30369385

Peptides detected in this lncRNA

>peptide 1 (64 aa)
QPRRPMLVYRSPMKDLGFGGSHPPDFLSRSGGGGVVRRSHTQVVVGTARGEVERRASSSLFSSP*

>peptide 2 (90 aa)
MTYKSLGEAARYKMVEHTDVGRGETLQNGIRADSRGFTGAYVAVAQAWCAWLVWTRSGHSMTHALALDTRTWPRGDVPGLGLIDGDVDLS*

>peptide 3 (46 aa)
MGDWEPALLDVSLTLILSPASTIYSANQVQEVLKFFDDTHVADLLR*

>peptide 4 (46 aa)
MVRMAGVDPEWSQHDTCAGTGHTDVAKRGRSWPGVDRRGRRSLLRG*

>peptide 5 (33 aa)
MVSEPTLAVSRARMSQLRRHGAHGWCGPGVVTA*

>peptide 6 (31 aa)
MSLSPSYYRPRQRYIAPTRSRKFLSSLMIPM*

Sequence

>CNT30369385
CGCAGCCCAGGAGGCCCATGTTAGTCTATCGCAGCCCAATGAAGGATTTAGGGTTCGGTGGGTCTCATCCTCCTGACTTCCTGAGTCGGAGCGGCGGCGG
CGGCGTAGTGCGGCGCAGTCACACGCAGGTGGTGGTAGGGACAGCGCGCGGCGAGGTGGAGCGTCGTGCATCCTCTTCACTCTTCAGCTCACCATGAATA
GCATCCACCGTCTCCCCCCATCGACCAGCTGCTGGCAACATACGTTTCTATCAGCAGCTAGCTGTCCTAGCTAGCCTCATCAGTTTAGCGCATCGATGGG
AGATTGGGAGCCGGCACTGCTCGATGTCTCTCTCACCCTCATATTATCGCCCGCGTCAACGATATATAGCGCCAACCAGGTCCAGGAAGTTCTTAAGTTC
TTTGATGATACCCATGTAGCTGACCTTCTTCGATGATACTTTGTTCCCATATCTGATTGGTTGATGTTGATATACATTGCAATGTGTAGGCACCAAACAA
AGCAGTTGTTGTGTTCCTCTACATAGAGATTTTTACATCATCTCTGATATGTCTCATGTTTCTGTTAATTATCTCCTATCCCAGTCCACTTTCATGGGCT
TTAAAGCTGCACTGCCAGTAAATTGAGGTGGTAAGCAGCCATCGAATCATCCGCTCCTAAAATTCTAAGCATTCGTGACAAGTTAATAGATGCTACACTA
AGACCTTGACTTTGCAACCTTCAGTCTCTAATTCTCTGCATGCATCATTTACTCCAGAGTTCTAATTAACAGGATTTCAGGTGAAGGCCATCTGTGGATC
CAAAATATATTGTTCTTTGGCTAAGATTTTAGGTCTGGCTGTTTTTCTCCATTTCATATAAGCTTTTTGAAAATATCCCATATTAAATATTTCTATTTGA
GAAACTATCTGGATACTTTGATTAATGTAACATCCCGGACTAGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAA
GCTGATCTCTAAAGAACTCCGAGGTTAAGCGTGCTTGGCCTGGAGCAATGGGTGACCGATCGAGCACGAGTGAGGACAAAGTGCGCAGAAAAGACCGTCT
ATGACCTATAAAAGCCTGGGAGAGGCGGCACGTTACAAAATGGTAGAGCACACGGACGTGGGGAGAGGCGAGACGTTACAAAATGGTATCAGAGCCGACT
CTCGCGGTTTCACGGGCGCGTATGTCGCAGTTGCGCAGGCATGGTGCGCATGGCTGGTGTGGACCCGGAGTGGTCACAGCATGACACATGCGCTGGCACT
GGACACACGGACGTGGCCAAGAGGGGACGTTCCTGGCCTGGGGTTGATCGACGGGGACGTCGATCTCTCTTAAGAGGGTGAGGGTGTAACAACCCGACCT
AGGGCTTAATAGGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCTAGATGGCGGGTTTCGTGTAATTGTTGCCTTCTTTTTTTCCACTAT
ATTCAATGAAATTGACACACCGGTGCCAGTTCATTAAAAAGAAAAAAAAATCTGTGACGGGGTTTATACTTTAGATCTTTTCTGTTGCAGATGAGCTGAA
AAACTCTTAAAATTGGATAGCTCAAATATATGTAATATGTAATTGTATTTCTAAAGCTAGAGCCATATCAATCTGCACATATTTGTTTTATGCTATTCCA
TCTAATTTGTAACTGCTTTTGTTTCATAAGTCATATATGCAGTTGGTAATGTGGTATAAAATTTGAGCTATGATATTTCAGACAGACTGAGGGCATATAG
AAAGTTAAGCTTTCAGGTGCCATGATCCCATTCGCTTTTCAATTGATTAAATGGAATTATTTTGTTGGTAATCTCT